| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2681763 = | 283 (0.790) | 13 (0.040) | 6/94 | NT | 5.3% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | CP009273 | 2681792 = | 229 (0.760) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
Only 100 of 357 total aligned reads displayed.
GATTGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCG > CP009273/2681696‑2681830 | tttcctcaccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcc < 1:19489258‑M1/1‑1 (MQ=255) ttGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc > 1:10489305/1‑68 (MQ=255) ttGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc < 1:6016828/68‑1 (MQ=255) tGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTcgc > 1:17153575/1‑67 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAg < 1:6701485/67‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAg < 1:22519829/67‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAg < 1:24978053/67‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGc < 1:23806448/68‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGc < 1:26035779/68‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGc < 1:12063117/68‑1 (MQ=255) caccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGc < 1:12423503/68‑1 (MQ=255) ccaagcctgtcgacaaagacgcgctatatcaggcaattgacgatgcgctggagcaatcCGCgccaacc < 1:16317215‑M1/10‑4 (MQ=255) ccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGt < 1:16109005/68‑1 (MQ=255) ccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGt < 1:12936567/68‑1 (MQ=255) ccaGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGt < 1:624400/68‑1 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:17476229/1‑68 (MQ=255) ccTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtg > 1:7230293/1‑68 (MQ=255) cTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtgg < 1:24294514/68‑1 (MQ=255) gTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggct < 1:2781654/68‑1 (MQ=255) gTTCCAGCAAACGCAGCACCAGCGGGCTGCTGGTGACAATTGGCTCGCGCCAGCGTTCATCGGtggct < 1:22895555/68‑1 (MQ=255) tCCAGCAAACGCAGCCGCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggcggg < 1:2807535/68‑1 (MQ=39) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggctgg < 1:24513372/68‑1 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggctg > 1:2086335/1‑67 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggctg > 1:5417000/1‑67 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGgggctgg < 1:26419676/68‑1 (MQ=255) tCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGAAAATTGCCTCGCGCCAGCGTTCATCGGtggctgg < 1:10209880/68‑1 (MQ=255) ccAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGtggctggc > 1:29270817/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:9650873/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:25812539/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:13568986/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:6554899/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:10032230/1‑68 (MQ=255) cAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg > 1:18519622/1‑68 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:15155211/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:3918506/68‑1 (MQ=255) aaaCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGa < 1:1697149/68‑1 (MQ=255) aaaCGCAGCAGCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCgg < 1:23261881/67‑1 (MQ=255) aCGCAGCATCCGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt < 1:4007275/68‑1 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt > 1:16698905/1‑68 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt > 1:20394359/1‑68 (MQ=255) aCGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCAGTGGCTGGCGCGGAtt > 1:10807196/1‑68 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGAtt > 1:26660864/1‑66 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:8534623/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:2898232/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGc < 1:20784065/68‑1 (MQ=255) gcagcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATACGTGGCTGGCGCGGAtt > 1:23581061/1‑66 (MQ=255) atcaggcaattgacgatgcgctggagcaatcCGCGCCCGCGGTCATCGGTGGCTGGCGCGGATTGCt < 1:23986385‑M1/36‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:4694056/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:15504918/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:3629434/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:930893/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCt < 1:8858241/67‑1 (MQ=255) agcaTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGGGGCTGGCGCGGATTGCt < 1:8075705/67‑1 (MQ=255) tcaggcaattgacgatgcgctggagcaatcCGCGCCCCCGGTCATCGGTGGCGGGCGCGGATTGCTc < 1:11269072‑M1/37‑1 (MQ=255) aTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTcc < 1:1873160/66‑1 (MQ=255) aTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTcc < 1:12705626/66‑1 (MQ=255) aTCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCa > 1:9105979/1‑67 (MQ=255) gcaattgacgatgcgctggagcaatcCGCGCCAGCGTTCATCGGTGGGTGGCGCGGATTGCGCCAgc < 1:21050333‑M1/41‑1 (MQ=255) cAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgcg < 1:11841393/68‑1 (MQ=255) aGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAgcgc > 1:216606/1‑68 (MQ=255) cGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCa > 1:24243709/1‑67 (MQ=255) gggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCa < 1:17529749/66‑1 (MQ=255) gggCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCAt < 1:15165092/67‑1 (MQ=255) gacgatgcgctggagcaatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg < 1:13304335‑M1/47‑1 (MQ=255) gCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCg > 1:14022045/1‑67 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGt < 1:7427620/67‑1 (MQ=255) cTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc > 1:2728029/1‑68 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:21212121/67‑1 (MQ=255) tGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTc < 1:6897444/67‑1 (MQ=255) ggTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAAtt > 1:3190780/1‑67 (MQ=255) gTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTg > 1:22251933/1‑67 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTg > 1:28882986/1‑66 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:3510403/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:10653/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:4413644/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:10951713/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:28528640/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:11420753/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:11674166/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:8312316/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:26976108/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:18056892/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:12020664/67‑1 (MQ=255) tGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGc < 1:15645405/67‑1 (MQ=255) tGACAATTGCCGCGCGACAGCGTGCATCGGTGGCTGGCGCTGATGGCTCCAGCGCATCGTCAATTGc < 1:16407297/67‑1 (MQ=255) aCAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTg > 1:20185856/1‑68 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:21892796/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:27529962/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:13057330/68‑1 (MQ=255) aaTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGat < 1:24861321/68‑1 (MQ=255) agcaatcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGata < 1:14649863‑M1/61‑1 (MQ=255) aTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGata > 1:4326961/1‑68 (MQ=255) aTTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGata > 1:15932447/1‑68 (MQ=255) tGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata > 1:19419686/1‑68 (MQ=255) gCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAtata > 1:3044030/1‑67 (MQ=255) ccTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:19071813/1‑68 (MQ=255) tcCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc < 1:26303654‑M1/65‑1 (MQ=255) cTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgc > 1:22733246/1‑67 (MQ=255) cCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAgcgc < 1:770364‑M1/67‑1 (MQ=255) CGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGcgcg > 1:5565083‑M1/1‑68 (MQ=255) | GATTGCGCCACCAGCCGCGCCTGTTCCAGCAAACGCAGCATCAGCGGGCTGCGGGTGACAATTGCCTCGCGCCAGCGTTCATCGGTGGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCG > CP009273/2681696‑2681830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |