BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3375198 =	320 (0.890)	30 (0.100)	11/94	NT	10.6%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
*	?	CP009273	3375228 =	235 (0.780)	30 (0.100)	11/94	NT	10.6%	coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

Only 100 of 152 total aligned reads displayed.

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGT  >  CP009273/3375228‑3375294

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:2013246/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:8893035/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:22082952/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:15932073/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTAAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:4593042/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:7664496/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:20994437/1‑68

  TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG                                                                           <  1:2534619/68‑1

  TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:12910271/1‑67

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:9731710/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:77114/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:20746203/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:8243802/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:23232816/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:7933883/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:25435109/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:25918625/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:27434453/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:29604340/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:3278548/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:4142706/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:4329791/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:24854396/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:5221160/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:5514068/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:6023526/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:613309/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:6621390/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:7470744/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:10213038/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13752214/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13906943/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13404722/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13004550/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:12283707/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:12163000/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:16065698/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:11639977/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:11422505/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:11253342/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:17916089/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:10290616/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:23194194/68‑1

   TTGACGGCATCTTTTAGCTTACCATCGCTCTACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:10724297/68‑1

    TGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCG                                                                         <  1:28461851/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:14667710/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:1648593/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:18285157/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:8805737/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:20192730/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:26649340/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:6452889/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:4911016/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:25802120/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:6144500/68‑1

      CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          >  1:1749199/1‑65

       CGCCATCTTTTAGCTGACCATCGCTGAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:20067048/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:25374019/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:25933908/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:1014977/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:1507706/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:6819045/1‑68

        GCCATCTTTTAGCTGACCATCGCTCAACGTTTCACCTTCCAGCGCTGGCGTGATCATTTCAGGGCTGG                                                                     <  1:4520119/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:23812073/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:2179331/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:17236255/1‑67

          CATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                   <  1:19384095/68‑1

             CTTTAAGCTCACCATCGCTCAACGTTCCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:1349998/68‑1

                  AGCTGACCCTCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                           <  1:11532733/68‑1

                  AGCTGACCATCGCTCAACGTTCCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                           <  1:8593352/68‑1

                     ttcCCATCGCTCTACGTTGCACGTACCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                         <  1:27972459/64‑1

                     TGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                         <  1:5066387/67‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCCGCGCTGGAAGGTGCAACG                                                          <  1:27093685/66‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                         <  1:10964085/67‑1

                                   cgaTGCACCTTCCACCGCTGGCGGCAGCATTACAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:15437811/65‑1

                                   CGTTGCCCCATCCAGCGCTGGCGTGATCATTTCCGCGCTGCAAGGTGCAACGATGAGCGATGGTCAGC                                          <  1:22099791/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:8570946/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:29445111/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCAATTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:25877630/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGCGAGCATTTCACCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:5776898/68‑1

                                   CGTTGCACCTACCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:5798214/68‑1

                                    gtgGCACCTTCCCGCCCTGGCGTGAGCAATTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCT                                         <  1:25557401/65‑1

                                       GCACCTACCAGCGCGGGCGTGACCATTTCACCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAA                                       <  1:9398514/67‑1

                                               CAGCGCTGTCGTGCGCATTTCACCGCTGGAAGGTGCAACGATGAGCGATGGTCAGCTAAAAGATGGCG                              <  1:20012154/68‑1

                                                   GCTGGCGTGATCATTTCAGCGCTGGAAGCTGCAACGTTGACCGAAGGTCAGCTAAAAGATGGCGGCAA                          >  1:15377441/1‑68

                                                       GCGTCATCATATCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGc                      <  1:11853342/68‑2

                                                                      CGCTGGAAGGGGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAA       <  1:20668655/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:18341521/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:936496/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:18920837/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:19043863/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:19557048/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:28225979/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:8389167/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:7910287/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:17272244/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:2472044/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:24930634/1‑68

                                                                          tGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAATGTATTAAAATCGATGAAGTTG   <  1:257858/67‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG   <  1:23581844/68‑1

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGT  >  CP009273/3375228‑3375294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.