| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 5 (0.020) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 228 total aligned reads displayed.
CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG < CP009273/3729685‑3729620 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:5900341/1‑68CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:14957518/1‑68 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:19048619/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:18719291/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:11060525/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:23068991/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:24938692/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:2732468/68‑1 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:22234031/1‑67 GGCATGATAACACGCACCAACCACGCTTCAGGCTCGTAGCGCAACTGCCTGAGACAAAGTAAAAAG > 1:3048847/1‑66 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:29630534/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:29455610/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:22631440/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:7283593/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:4585877/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCC < 1:13777628/66‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCC < 1:12415075/66‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:10602258/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:23908765/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:24157753/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:26280267/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:13170607/65‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTA > 1:11648831/1‑68 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:16001171/67‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:15780815/67‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:4343567/67‑1 TGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAT < 1:17401246/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAACAGCCTTATCC < 1:21926781/67‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:26008899/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:5836216/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAACCG < 1:15108037/68‑1 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:12039210/1‑67 AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT < 1:8870575/68‑1 AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT < 1:21307894/68‑1 ACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCA > 1:24271452/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13873865/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:25554393/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:16677189/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:16370671/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:26683785/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:28650193/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:15622665/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:14662880/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:3346978/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:3530038/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:21073783/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13342077/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:6308620/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:6555907/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:7392754/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:756115/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10970792/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:9451157/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:9686749/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:25182092/68‑1 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:2159927/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:1719090/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:20040764/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:22181535/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:22717656/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:17676496/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTT > 1:5067100/1‑53 GCCTTATCCGACTTGTCAGTCGGATAAGGCGTTTTACTTTGTCTCAGGCAGTTGAGCTCCGAGCGTGA > 1:5176537/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:20834366/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:29386095/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:17343926/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:27919996/1‑68 TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:25360651/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:23230175/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:13712166/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:3118813/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:8137818/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:28231998/68‑1 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTATGAGCCTGAAGCGT < 1:10106400/68‑1 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGT > 1:21442127/1‑68 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGT > 1:6829002/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:2887340/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT > 1:8030639/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:24826886/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:2528911/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:19869459/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:12896817/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT > 1:4842285/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:17812782/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTGCGAGCCTGAAGCGTTG > 1:6135374/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:28960341/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:26100938/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:15962971/1‑68 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:20139842/68‑1 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:23609463/68‑1 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:4127970/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:839190/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:8350213/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:3833016/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:5456290/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:11329289/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:7000964/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:24418470/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCAGAAGCGTAGTTG > 1:14059923/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:1942645/1‑68 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG < CP009273/3729685‑3729620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |