| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 5 (0.020) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 791 total aligned reads displayed.
AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCT > CP009273/3729614‑3729747 | aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:13643015/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:17220941/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:2185668/1‑68 (MQ=255) aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:11267496/1‑68 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:7546684‑M2/1‑65 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:7000964‑M2/1‑65 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:8350213‑M2/1‑65 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:28219832‑M2/1‑65 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:15699161‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:26100938‑M2/1‑62 (MQ=255) caacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:29057287‑M2/1‑62 (MQ=255) aacTCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga > 1:18703005‑M2/1‑61 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga < 1:14023708‑M2/68‑8 (MQ=255) acGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggat > 1:6829002‑M2/1‑60 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:17343926‑M2/1‑56 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:22446239‑M2/1‑56 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:25295504‑M2/1‑56 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:24314133‑M2/1‑56 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACCGACAagtcggataagg > 1:7321441‑M2/1‑56 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:9391968‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:17516149‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:21149015‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:28650193‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:10970792‑M2/1‑55 (MQ=255) gCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCaa > 1:28518807/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:1678695/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:3536385/1‑68 (MQ=255) cTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg > 1:5100065/1‑68 (MQ=255) tCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg < 1:16499176/67‑1 (MQ=255) cGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGa < 1:978645/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:10031600/68‑1 (MQ=255) cTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc > 1:13786968/1‑68 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:1157224/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:18309612/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:21002131/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:1010671/68‑1 (MQ=255) aaCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAt < 1:18047740/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:9106704/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt < 1:22836841/68‑1 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:20324042/1‑68 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:22160461/68‑1 (MQ=255) cTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTa < 1:7787722/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:5470389/68‑1 (MQ=255) gtGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACata < 1:9532954/67‑1 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:29366379/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:445539/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:23409051/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:12681056/1‑67 (MQ=255) cAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg < 1:26354264/66‑1 (MQ=255) aGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCcgcg < 1:14326535/68‑1 (MQ=255) gTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa > 1:15485298/1‑68 (MQ=255) aaaacCCCTGATCCGACTGACAaggcggataaggctttttactttgtctcaggcagttgagctacgag > 1:24479597‑M2/1‑22 (MQ=255) aaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTa < 1:867024/68‑1 (MQ=255) aaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTaa > 1:2741907/1‑67 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:25733514/68‑1 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:2676155‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:14662880‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:29840551‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:13342077‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:12461939‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:8114069‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:20040764‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:2159927‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:25554393‑M1/1‑13 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:19341495/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:28937202/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:6636517/1‑68 (MQ=255) gCCTTATCCGACTGACAAGGCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:1493015/1‑68 (MQ=255) ccTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:27919996‑M1/1‑12 (MQ=255) cTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGtt < 1:6151476/68‑1 (MQ=255) cTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGtt < 1:24224516/68‑1 (MQ=255) tATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcg < 1:23230175‑M1/68‑60 (MQ=255) aTCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgt > 1:7905587‑M1/1‑8 (MQ=255) aTCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGt < 1:3288630/68‑1 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt < 1:635639‑M1/68‑62 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagtcgagctacgagcctgaagcgtt < 1:21375637‑M1/68‑62 (MQ=255) tCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGtt < 1:3490021/68‑1 (MQ=255) tCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGtt > 1:12970981/1‑68 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:29457013‑M1/1‑6 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:15962971‑M1/1‑6 (MQ=255) ccGACTGAGTTGTCGGATAAGGCTCAAGGAAGTGCAATGACATAGGCGCCGCGATTAACCGGTGGGTa > 1:5293281/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:19632508/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:25165209/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:23984991/1‑68 (MQ=255) cGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgt < 1:23609463‑M1/68‑64 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:17722370/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:26635698/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:19907249/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:2580550/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:20719016/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:16282250/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:22666174/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:11961175/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:4024678/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:464472/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:498534/68‑1 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:3833016‑M1/1‑3 (MQ=255) aCTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt > 1:24989810/1‑66 (MQ=255) aCTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt > 1:5862092/1‑66 (MQ=255) cTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt < 1:10401676/68‑1 (MQ=255) | AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCT > CP009273/3729614‑3729747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |