| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 370 (1.030) | 45 (0.160) | 14/90 | NT | 13.8% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 267 (0.920) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 169 total aligned reads displayed.
GAATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190150‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190110‑4190176 GAATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACG > 1:3552630/1‑68 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:9758984/1‑68 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:28095625/1‑68 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:23238380/1‑68 ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG > 1:138139/1‑68 TAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGG > 1:4251876/1‑68 TAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGG > 1:12460684/1‑68 AGCACTCTCCTGCATACACGCCCCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG > 1:17704057/1‑68 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:10056408/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:8747814/68‑1 AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG < 1:2351111/68‑1 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCCGACGGGGGGCG > 1:11258100/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGCCGGGGGGCG > 1:17890287/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:28372737/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:28667518/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:25540924/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:11991521/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:524357/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:598161/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:18767282/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG > 1:17765560/1‑68 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGG < 1:18337752/66‑1 ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCG‑CCCCCAAATGTAGACCAGACGGGGGGCGA > 1:18175190/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:21331296/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA < 1:26312054/68‑1 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:25867591/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:22202919/1‑68 TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA > 1:14865666/1‑68 CTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA > 1:14354411/1‑68 ATACACGCACCGATAGCCACTTTTTTCCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGT < 1:2377958/67‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGCCCCGACGGGGGGCGAAAAAAAGTGG < 1:372664/68‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG < 1:7210845/68‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG < 1:17377808/68‑1 TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG < 1:12969331/68‑1 accCGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGC < 1:8310115/65‑1 CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT < 1:13947454/68‑1 CACGCACCGATAGCCACTTTTTTTCCCCCCCCCAATGAAGACCCGACGGGGGGCGAAAAAAAGTGGCT < 1:2265989/68‑1 CGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTAT < 1:25914/68‑1 CCGATAGCCACTTTTTTTCGCCCCCCAAATGTCCACCAGACGGGGGGCTAAAAAAAGTGGCTATCGGT < 1:16103792/68‑1 tcGCCACTTTTTTTCGCCCCCCACATGGAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:29241367/66‑1 atGCCACTATTTTTCGCCCCCCAAATGTAGTCCTGACGGGCGGCGAAAAAAAGTGGCTATCGTTGCGT < 1:27467544/66‑1 aAGCCACTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:6390035/66‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCCGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:27745836/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:503569/68‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:22425904/68‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT < 1:10262199/68‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:3830795/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:24574222/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:2857625/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:27591766/67‑1 TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG < 1:20958549/67‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:18039931/68‑1 CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT < 1:621137/66‑1 CACATTTTTTCGCCCCCCAAATGTAGACCACACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT < 1:488974/68‑1 GCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGT < 1:16617140/67‑1 CCCAACTGTAGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAT < 1:10134166/68‑1 AATGTACACCACCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTG < 1:17151288/68‑1 GGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCA < 1:27343851/68‑1 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:26194688/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:8922042/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:6879996/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:15727293/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:25167161/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:29501250/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:24066962/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:11477540/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:21594378/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:16143724/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:18834156/1‑66 GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC > 1:16727704/1‑66 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:24248752/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:5876752/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:7454221/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:10030620/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:1394010/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:15613943/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:2586276/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC < 1:25060333/67‑1 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:24913920/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:16746177/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:22588100/1‑67 GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC > 1:12348173/1‑67 GGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCG > 1:27817093/1‑68 CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGA < 1:22951816/67‑1 GAAAAAAGGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:22699249/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTGGCACTCGATG < 1:21959898/68‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:2113849/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:15832546/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:17542687/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:10745488/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:29061139/67‑1 GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:27169990/67‑1 GAAAAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:20795839/67‑1 GAAAAAAACTGGCTATCGTTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT < 1:21053348/67‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT < 1:18607174/68‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT < 1:21295247/68‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT < 1:827503/68‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT < 1:4502729/68‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGC < 1:6612303/67‑1 AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGC < 1:17448872/67‑1 GAATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4190150‑4190073‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTT > CP009273/4190110‑4190176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |