| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 370 (1.030) | 45 (0.160) | 14/90 | NT | 13.8% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 267 (0.920) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 517 total aligned reads displayed.
CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 | gCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGaaaaa > 1:7097699/1‑68 (MQ=255) tttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTgg < 1:1646897/68‑1 (MQ=255) atacacgcaccgatagccacttttttccgccccccaaatgtagaccagacggggggcgaaaAAAAGt < 1:2377958‑M2/6‑1 (MQ=255) tacacgcaccgatagccactttttttcgccccccaaatgtagccccgacggggggcgaaaAAAAGTgg < 1:372664‑M2/8‑1 (MQ=255) acacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTg < 1:2118518‑M1/44‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCt > 1:23613479/1‑68 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTa < 1:27591766‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCGGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTa < 1:27745836‑M1/48‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATc > 1:17925597/1‑68 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATc > 1:18685377/1‑68 (MQ=255) gTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCg < 1:9409047/68‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGTCGGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCgg < 1:29638770‑M1/52‑1 (MQ=255) accgatagccacttttTTTCGCCCCCCGGCTGGGCGACATTTGGGGGG‑CGCAAAAAAGTGGCTTTCgg < 1:21497064‑M1/52‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGt < 1:22198716/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGt < 1:20440955/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTT‑GGGGG‑CGAAAAAAAGTGGCTATCGGt < 1:7697296/67‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGGCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGt < 1:12395065/68‑1 (MQ=255) ccgatagccactttttttcgccccccaaatgtccaccagacggggggctaaaAAAAGTGGCTATCGGt < 1:16103792‑M2/16‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGc > 1:22561206/1‑68 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGc < 1:17629855/68‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATAGGTGc > 1:9706886/1‑68 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCg < 1:13082571/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCg < 1:10604738/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgt < 1:25953596/68‑1 (MQ=255) tcgccactttttttcgccccccacatggagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgt < 1:29241367‑M2/20‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgt < 1:22425904‑M2/20‑1 (MQ=255) tagccactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:24574222‑M2/19‑1 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtg < 1:2844093‑M1/58‑1 (MQ=255) aagccactttttttcgccccccaaatgtagcccagacggggggcgaaaAAAAGTGGCTATCGGTGCg < 1:6390035‑M2/19‑1 (MQ=255) gccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGtgcgggt < 1:8310115‑M1/59‑4 (MQ=255) aggcTTCCCTTTCGCCCCCCGGCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtg < 1:10821665/64‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:15760930/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:12897454/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:21601784/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:17517828/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:1804141/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:7964898/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCT‑CATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTa > 1:28953587/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGCCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt > 1:6692266/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt < 1:27087484/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt < 1:4940770/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt < 1:19895187/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATATGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCgtgt < 1:11121348/67‑1 (MQ=255) ccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTa < 1:17377808‑M1/60‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:7267484/1‑68 (MQ=255) ccctttttttcgccccccacaggtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:1774842‑M2/24‑1 (MQ=255) cactttttttcgccccccaaatgtagaccagacggggggcgaaaAAAAGTGGCTATCGGTGCgtgt < 1:621137‑M2/22‑1 (MQ=255) cactttttttccccccccaaatgtagcccagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTAt < 1:12238047‑M2/24‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:312746/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:8845289/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:22894844/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:6907713/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:14424152/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:20905503/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:14013819/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:19232186/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:27298751/67‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:13537541/68‑1 (MQ=255) ttCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGc < 1:27824950/68‑1 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:15307020/68‑1 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg > 1:4056941/1‑68 (MQ=255) ccTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAgg < 1:1471907/68‑1 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:10023456/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgag < 1:6117286‑M1/68‑1 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:26673098‑M1/1‑68 (MQ=255) TTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga > 1:25867591‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:524357‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:28667518‑M1/1‑68 (MQ=255) CGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt > 1:29074360‑M1/1‑68 (MQ=255) CCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGt < 1:18337752‑M1/66‑1 (MQ=255) CCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTa > 1:4251876‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:23238380‑M1/1‑68 (MQ=255) CCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt > 1:138139‑M1/1‑68 (MQ=255) cccaactgtagaccagccggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt < 1:10134166‑M2/39‑1 (MQ=255) CGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTc > 1:3552630‑M1/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGGAGGAGAGTGCTATTCTg > 1:21910111/1‑68 (MQ=255) tCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg > 1:18886266/1‑68 (MQ=255) aatgtacaccacccggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg < 1:17151288‑M2/43‑1 (MQ=255) atgtagacgagacggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTgg < 1:25466082‑M2/44‑1 (MQ=255) aTTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:11845332/1‑67 (MQ=255) aTTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCg > 1:15595854/1‑67 (MQ=255) tttGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:9143862/1‑68 (MQ=255) tttGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:4470165/1‑68 (MQ=255) tttGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:5046138/1‑68 (MQ=255) tttGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:12031215/1‑68 (MQ=255) tttGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc > 1:25650488/1‑68 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:24066962‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:26194688‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:27992350‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:16727704‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:25167161‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:11477540‑M2/11‑66 (MQ=255) gggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc > 1:5662479‑M2/11‑66 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:1394010‑M2/10‑67 (MQ=255) ggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc > 1:24913920‑M2/10‑67 (MQ=255) gaaaAAAGGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:22699249‑M2/63‑1 (MQ=255) gaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:24343928‑M2/63‑1 (MQ=255) gaaaAAAACTGGCTATCGTTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt < 1:21053348‑M2/63‑1 (MQ=255) aaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCt < 1:18607174‑M2/66‑1 (MQ=255) aaaaGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTa > 1:29414713/1‑68 (MQ=255) | CGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGG‑CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTA > CP009273/4190043‑4190177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |