New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =134 (0.370)21 (0.070) 7/96 NT 12.5% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 178 (0.580)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 273 total aligned reads displayed.

TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362
                                                                   |                                                                  
tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                    <  1:5881787‑M1/68‑1 (MQ=255)
tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                    <  1:2354538‑M1/68‑1 (MQ=255)
tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                    <  1:11973305‑M1/68‑1 (MQ=255)
tGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                    <  1:2561473‑M1/68‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgccgc                                                                >  1:21559038‑M1/63‑67 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:28958771‑M1/6‑1 (MQ=255)
     tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg                                                               <  1:1683895‑M1/6‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCGAGGAGCACGTCTGGCCGCG                                                               <  1:10973819‑M1/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                               <  1:370598‑M1/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                               <  1:21759912‑M1/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                               <  1:12653440‑M1/68‑1 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                               >  1:4708511‑M1/1‑68 (MQ=255)
      cTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                               >  1:15243454‑M1/1‑67 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                             <  1:4783805‑M1/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                             <  1:7945492‑M1/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                             <  1:25564227‑M1/68‑1 (MQ=255)
       tCGCCAGCGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                             <  1:14313051‑M1/68‑1 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:29428424/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:28066342/1‑68 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          >  1:7149548/1‑68 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:7382568/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:25088411/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:26954044/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:24777342/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                          <  1:19086518/67‑1 (MQ=255)
            aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt                                                        >  1:14827017/1‑68 (MQ=255)
            aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt                                                        >  1:20659930/1‑68 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:3999253/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:11283045/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:26625050/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     <  1:10501164/67‑1 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:22246707/1‑66 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:27733236/1‑66 (MQ=255)
                 gTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGACCACGTCTGGCCGCGGCTGAATaaa                                                     >  1:10187415/1‑66 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:8736397/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                >  1:22587434/1‑67 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                <  1:25236773/67‑1 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:3603/68‑1 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             <  1:565953/68‑1 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                             >  1:679420/1‑68 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:10019010/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:1565623/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                           <  1:8621529/68‑1 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:29561203/1‑67 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:7110245/1‑67 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                         >  1:19848798/1‑67 (MQ=255)
                             ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg                                        >  1:12180480/1‑67 (MQ=255)
                              tCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGcc                                      <  1:24694562/68‑1 (MQ=255)
                                gacgaTTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCa                                     >  1:23448220/1‑67 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:6612672/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:24175095/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:29741212/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                              <  1:17340129/68‑1 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGGGGCGGAATTAAGCTGCTCTAATCGCCAccgcgcgg                             <  1:26103345‑M1/40‑2 (MQ=255)
                                       gcagccccaccagacgcacaccgcgcccGCCGCGGCGGAATAAAGCTGATCTAATCGCCCccgcgcgg                             <  1:27883141‑M1/40‑2 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgggggggcgattagat                         >  1:5461061‑M1/1‑32 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:26746613/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:8264332/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                          >  1:22458422/1‑67 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:1551544/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:13132317/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:18936120/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                         <  1:1846327/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAcc                       <  1:12250242/68‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                        <  1:18581248/67‑1 (MQ=255)
                                               accagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTg                     <  1:18225894‑M1/48‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    >  1:9069882/1‑68 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                    <  1:22938753/68‑1 (MQ=255)
                                                  accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa                  <  1:2174748/68‑1 (MQ=255)
                                                    ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg                >  1:28414900/1‑68 (MQ=255)
                                                     cgcacaccgcgcccGCCGCGGCTGAATAAAGCTGCTCTAATCGCCACCGCGCGTAAAaccggggttg                <  1:6473834‑M1/53‑4 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:6682771/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:12896472/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:11085599/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc             >  1:13492614/1‑68 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcgcaggttttacgcgcggtggcggttagctccgcgttattccg            >  1:18841043‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag            >  1:19686733‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag            >  1:2546739‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgagtagatcagctttattcag            >  1:8041579‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttaatcccaggttttacgcgcggtggcgattagatcagctttattaag            >  1:3311838‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCggtcatcccaggttttacgcgcggtggcgattagatcagctttattcag            >  1:137762‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg            <  1:16297910‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg            <  1:8539536‑M2/67‑2 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc          <  1:25910840‑M2/68‑4 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgc           >  1:2058477‑M2/1‑65 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgc           >  1:23124037‑M2/1‑65 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc          <  1:11397663‑M1/59‑1 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGAGGAAcgcc          <  1:17287795‑M1/59‑1 (MQ=255)
                                                            cgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgccgc        <  1:9650029‑M1/61‑1 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgc        >  1:20248263‑M2/1‑63 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgc        <  1:26009714‑M2/68‑6 (MQ=255)
                                                             cGTCTGGCC‑CGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg      >  1:28129365‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg      >  1:13928971‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg      >  1:16426944‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg       <  1:20114920‑M2/67‑7 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc     <  1:6060611‑M2/68‑9 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc     <  1:14479863‑M2/68‑9 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:7800484/68‑1 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:4982822/68‑1 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg  <  1:23687008/68‑1 (MQ=255)
                                                                   |                                                                  
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGG  >  CP009273/248229‑248362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.