New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =134 (0.370)21 (0.070) 7/96 NT 12.5% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 178 (0.580)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 326 total aligned reads displayed.

GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427
                                                                 |                                                                   
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:7800484/68‑1 (MQ=255)
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:4982822/68‑1 (MQ=255)
ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg                                                                   <  1:23687008/68‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:15276699‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:5628947‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:4732717‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:29433272‑M1/67‑1 (MQ=255)
  CCGCGGCTGAATAAAGCTGATCTAATCGCAACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc                                                                  <  1:12675112‑M1/67‑1 (MQ=255)
   CGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggcg                                                                 >  1:19067612‑M1/1‑67 (MQ=255)
    gcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGcgcg                                                               <  1:9650029‑M2/7‑1 (MQ=255)
    gcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGcgcg                                                               <  1:25154727‑M2/7‑1 (MQ=255)
    GCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGcgcg                                                               >  1:4639586‑M1/1‑68 (MQ=255)
      ggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:25948062‑M2/9‑1 (MQ=255)
      ggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:11397663‑M2/9‑1 (MQ=255)
      ggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGgt                                                             <  1:21724184‑M2/9‑1 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCgg                                                              >  1:18188665‑M1/1‑67 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:18008988‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:24264772‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:17438327‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:20272734‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             <  1:21435772‑M1/68‑1 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:24999976‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:26305991‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:28392985‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:2883883‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:12292214‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:12052786‑M1/1‑68 (MQ=255)
      GGCTGAATAAAGCTGATCAAATCGCCACCGCGCGTAAAACCAGGGATGAACGCCGCGGCGGGCGCGgt                                                             >  1:16675489‑M1/1‑68 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:1167699/68‑1 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:6469044/68‑1 (MQ=255)
         tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg                                                          <  1:15543572/68‑1 (MQ=255)
          gAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGc                                                         <  1:3772352/68‑1 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:5820724/1‑67 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:21591257/1‑67 (MQ=255)
            aTAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGt                                                       <  1:9518867/68‑1 (MQ=255)
              aaaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg                                                        >  1:8650052/1‑65 (MQ=255)
               atgCTGATCTAAGCGCCACCGCGCGTAAAACCTGTGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:7442804/66‑1 (MQ=255)
               aaGCTGATCTAATCGCCACCGCGCGTAAAGCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:7159155/68‑1 (MQ=255)
               aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGGGGCGGGCGCGGTGTGCGTCtg                                                    <  1:18359939/68‑1 (MQ=255)
                aGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtgg                                                   <  1:17345896/68‑1 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:16589209/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:13977726/1‑68 (MQ=255)
                 gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  >  1:10078745/1‑68 (MQ=255)
                 caggttttacgcgcggtggcgattagatcagctttattcagccgcggcGGGCGCGGTGTGCGTCtggt                                                  <  1:18225894‑M2/20‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:27170455/66‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:11009816/66‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:2086932/66‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt                                                  <  1:4847069/66‑1 (MQ=255)
                   tGATCTAATCGCCACCGCGCGTAAAACCAGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg                                                    <  1:2386032/64‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg                                              <  1:19834692/67‑1 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:7994420/1‑66 (MQ=255)
                      tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:26140236/1‑66 (MQ=255)
                       cTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:25477101/1‑65 (MQ=255)
                       cTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg                                               >  1:23359788/1‑65 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:3822798/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:6667521/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:8125572/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:2058632/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:27611890/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:28037390/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:28235250/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:13366937/68‑1 (MQ=255)
                         aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGGGCGTCTGGTGGGGCTGc                                          <  1:8730596/68‑1 (MQ=255)
                         aaTCGCCACCGCGAGTAAAACCAGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc                                          <  1:23098739/68‑1 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        >  1:13745328/1‑68 (MQ=255)
                           tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt                                        <  1:15793192/68‑1 (MQ=255)
                              ccACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg                                     >  1:44468/1‑68 (MQ=255)
                               cACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg                                     <  1:11309426/67‑1 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:7074459/68‑1 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   >  1:10449695/1‑68 (MQ=255)
                                aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:16199963/68‑1 (MQ=255)
                                 tggcgattagatcagctttattcagccgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc                                   <  1:1704013‑M2/35‑1 (MQ=255)
                                   gcgcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGtt                                <  1:5162519/68‑1 (MQ=255)
                                     gcgTAAAACCTGGGATGAACTCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               <  1:13612943/67‑1 (MQ=255)
                                     gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGtt                                >  1:9183147/1‑66 (MQ=255)
                                     gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg                               <  1:3033284/67‑1 (MQ=255)
                                     gcgTAAAACATGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAAGTTg                               <  1:15057899/67‑1 (MQ=255)
                                         aaaaCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGa                          <  1:26871372/68‑1 (MQ=255)
                                          aaaCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAc                         <  1:3647993/68‑1 (MQ=255)
                                                  gATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAAt                 >  1:15460229/1‑68 (MQ=255)
                                                   aTGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                >  1:22730157/1‑68 (MQ=255)
                                                   aTGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                >  1:29281377/1‑68 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                <  1:22925482/67‑1 (MQ=255)
                                                    tGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATg                <  1:26988301/67‑1 (MQ=255)
                                                        cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           <  1:24019749/68‑1 (MQ=255)
                                                        cgccgcGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAg           >  1:8858985/1‑68 (MQ=255)
                                                         gccgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGa          <  1:18567456‑M2/60‑1 (MQ=255)
                                                         gccgcggcGGGCGCGGTGAGCGTCTGGTGGGGCTGCATGTGACTTTGCTTGACCCGCAAATGGAATGa          <  1:28979244‑M2/60‑1 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:14472773‑M2/62‑1 (MQ=255)
                                                           cgcggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACa        <  1:3918561‑M2/62‑1 (MQ=255)
                                                              ggcGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACt     <  1:11186611‑M2/65‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAATGTCAACTgg   <  1:21972160/67‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:28730177/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:20003545/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:8441605/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:22365726/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:12542407/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:6772518/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:24599657/68‑1 (MQ=255)
                                                                 gggcgCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGt  <  1:6081034/68‑1 (MQ=255)
                                                                 |                                                                   
GGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAAGACAACTGGT  >  CP009273/248295‑248427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.