New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =276 (0.770)22 (0.080) 7/90 NT 7.1% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 357 (1.230)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 558 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740
                                                                   |                                                                   
tcggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:1251114‑M1/1‑1 (MQ=255)
tAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     <  1:12917109‑M1/68‑1 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:14402937‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:13282848‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:25728799‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:29654431‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:7039627‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATCGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGAGAGCCAGCAGGATCGCT                                                                  <  1:7978101‑M1/68‑1 (MQ=255)
    cgtttatagcctgtacatgaaccgccactctgtctacggcacgttgattggttcgctctccggCGCt                                                                  <  1:20138180‑M1/4‑1 (MQ=255)
    cgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCt                                                                  <  1:24928120‑M1/4‑1 (MQ=255)
      ggAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGC                                                                <  1:10023062‑M1/67‑1 (MQ=255)
        tatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgcc                                                             >  1:18222418‑M1/60‑68 (MQ=255)
         aaaTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:7672886‑M1/67‑1 (MQ=255)
         aaaTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                             <  1:816474‑M1/67‑1 (MQ=255)
          tagcctgtacctgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:9183002‑M1/58‑68 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccg                                                            <  1:13907576‑M1/10‑1 (MQ=255)
          tagcctgtacatgaaacgcaactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:17658036‑M1/58‑68 (MQ=255)
           aaggCGATCGCATAGGAGGGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:10159566/66‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          >  1:18412696/1‑68 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:2452370/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:9757598/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:14488587/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCAGCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:23162080/68‑1 (MQ=255)
             ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTAt                                                        <  1:1494899/68‑1 (MQ=255)
             ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTAt                                                        <  1:5195547/68‑1 (MQ=255)
              gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggt                                                       >  1:3205308‑M1/1‑64 (MQ=255)
              gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGACAGCCAGCAGGATCGCTGCGCCGCcggt                                                       >  1:25511603‑M1/1‑64 (MQ=255)
                gATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGa                                                     <  1:2051023/68‑1 (MQ=255)
                    gCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTc                                                 >  1:13364863/1‑68 (MQ=255)
                     cATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTc                                                 <  1:10795915/67‑1 (MQ=255)
                      aTAGGAGTGCGGCATCTTCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCa                                                <  1:25246133/67‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:16761081/68‑1 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:23968060/68‑1 (MQ=255)
                         ggAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            >  1:19988751/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt                                           >  1:22892124/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGCTCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:12091841/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:3465202/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:2630730/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:6344045/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:6557225/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:21209839/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:21992194/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:12714290/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:3144562/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:10499293/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCGATCGAACTCACCGGtt                                          >  1:4228584/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCAAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:1725171/1‑68 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:21776495/67‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       >  1:28359417/1‑68 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:5636248/68‑1 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCg                                      >  1:27252764/1‑67 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:28669880/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:17792182/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:1093023/1‑68 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:12352317/1‑67 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca                                    <  1:1965200/67‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:27365557/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggggagcggctactgtggggtaaccg                                >  1:26198495‑M1/1‑41 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:17508273/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:2588491/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:13511475/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:16518307/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:1917643/68‑1 (MQ=255)
                                        ccACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAg                              >  1:8737814/1‑67 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc                            >  1:23695245/1‑68 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc                            <  1:19585004/68‑1 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGc                             <  1:18554047/67‑1 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgag                           >  1:23262974‑M1/1‑36 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:14203490/1‑68 (MQ=255)
                                               cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa                       >  1:16131129/1‑67 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGTTTACCGCACAGTAGCCGATCACCGgc                  <  1:16289735‑M2/68‑3 (MQ=255)
                                                   aGATAGCCAGCAGGATCGATGCGCCGCTATCGAACTCACAGGTTACCGCACAGTAGCCGATCACCGgc                  <  1:10386620‑M2/68‑3 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcg                 >  1:11353072‑M1/1‑26 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcg                 >  1:26994583‑M1/1‑26 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:20846601‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:26488772‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:22655613‑M2/68‑4 (MQ=255)
                                                     ggttcgctctccggCGCTGCGCCGCTATCGACCTCACCGGTTTCCGCCCAGTAGCCGATCACcggcg                 <  1:18797310‑M1/53‑1 (MQ=255)
                                                     ggttcgctctccggCGCTGCGCCGCTATCGAACTCCCCGGTTGCCGCGCAGTAGCCGATCACcggcgg                <  1:6906249‑M1/54‑1 (MQ=255)
                                                     aTAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcg                 >  1:11811253‑M1/1‑25 (MQ=255)
                                                     aTAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:29446990‑M2/67‑4 (MQ=255)
                                                     aTAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:4972092‑M2/67‑4 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgc             >  1:19053670‑M1/1‑22 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:3961829‑M2/68‑8 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:27579401‑M2/68‑8 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             <  1:28876588‑M2/68‑8 (MQ=255)
                                                            tctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgc          <  1:29061890‑M1/60‑1 (MQ=255)
                                                             cagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg         <  1:20594531‑M2/67‑12 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg         >  1:24838223‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:15764586‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:6666057‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:7311704‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:28082222‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:8307397/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:15339962/1‑68 (MQ=255)
                                                              agGATCGCGGCGCCGATATCGAACTCACCGGTTCCCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:27840077‑M2/1‑55 (MQ=255)
                                                               ggATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg      >  1:2227709/1‑68 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:11514903/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:21438350/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:3689974/65‑1 (MQ=255)
                                                                   |                                                                   
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.