New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =276 (0.770)22 (0.080) 7/90 NT 7.1% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 357 (1.230)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 618 total aligned reads displayed.

AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800
                                                                  |                                                                  
agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc                                                                    <  1:12122403/67‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCgg                                                                 <  1:12871583/67‑1 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:24821550‑M1/1‑68 (MQ=255)
      gctgcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGgaga                                                              <  1:29061890‑M2/7‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:28807955‑M1/67‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:19102994‑M1/67‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:5484904‑M1/67‑1 (MQ=255)
        TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg                                                           <  1:27791425‑M1/68‑1 (MQ=255)
        TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg                                                           <  1:8549541‑M1/68‑1 (MQ=255)
         GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          <  1:14406653‑M1/68‑1 (MQ=255)
           GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa                                                         <  1:18696677‑M1/67‑1 (MQ=255)
           GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa                                                         >  1:63299‑M1/1‑67 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCa                                                      >  1:3700512‑M1/1‑68 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:27972896/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:19415889/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:11509945/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              <  1:14815664/67‑1 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:7810862/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              <  1:3367760/67‑1 (MQ=255)
                       cggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:2033865‑M2/25‑1 (MQ=255)
                       cggctactgggcggcaaccggtgagtgcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:6973586‑M2/25‑1 (MQ=255)
                       cggctactgcgcggtaaccggtgcgtgcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:23635580‑M2/25‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:22647946/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:1001245/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:19702637/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27492567/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:21294309/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:5138625/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:4883620/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:25804410/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:23071645/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:4610859/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:4166608/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:26080133/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:400659/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:6045023/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:10947839/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:11281036/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:13405664/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:18829694/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:13831596/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:16403068/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15562364/68‑1 (MQ=255)
                        tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc                                           >  1:20859394/1‑68 (MQ=255)
                        tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc                                           >  1:15848860/1‑68 (MQ=255)
                        ggctactgcgcggcaaccggggcgttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:22885897‑M2/25‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:19058050/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:18348505/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:29293963/68‑1 (MQ=255)
                               ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACa                                    >  1:23953242/1‑68 (MQ=255)
                                tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag                                   >  1:2453057/1‑68 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:3007925/1‑67 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGACCCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:26713200/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:14150215/1‑68 (MQ=255)
                                        aGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           >  1:28299886/1‑68 (MQ=255)
                                         gTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt                          >  1:1806829/1‑68 (MQ=255)
                                         gTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt                          >  1:12040305/1‑68 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCg                            <  1:16805264/64‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCg                            <  1:11689386/64‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:29674364/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:22443854/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:26989608/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:8345360/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:25551098/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:12709334/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:20601367/67‑1 (MQ=255)
                                           aGCCGATCACCGGCAGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:8954115/67‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt                      <  1:7210080/67‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:13099461/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:10750184/1‑68 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:17537415/68‑1 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:19809607/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:10423813/1‑67 (MQ=255)
                                                  cACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACa                 >  1:2343042/1‑68 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:9672337/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:7654179/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:28462233/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:27323577/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:15253148/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:25270853/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:16914930/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:29352677/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:21747677/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:20096928/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:17839984/68‑1 (MQ=255)
                                                     cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg                >  1:17348341/1‑66 (MQ=255)
                                                     cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:17736830/68‑1 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGCACCAATCAACGTGCCGTAGACAGAGTGGCGTGTCATGTACAGGCta            >  1:22178570‑M2/12‑68 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:1109909‑M2/12‑68 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAGGTACAGGCta            >  1:9183002‑M2/12‑68 (MQ=255)
                                                         ggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtat           <  1:6593461‑M2/58‑1 (MQ=255)
                                                         ggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCtat           <  1:26477351‑M2/58‑1 (MQ=255)
                                                          gcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATaa         >  1:24950285‑M2/9‑68 (MQ=255)
                                                           cgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATaa         >  1:23777401‑M2/8‑67 (MQ=255)
                                                           cgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGAGTTTCCTGTACAGGCTATaa         >  1:11372706‑M2/8‑67 (MQ=255)
                                                              agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg      <  1:6882633‑M2/63‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCg   >  1:10212044‑M2/2‑67 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:5664805‑M2/67‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:15131725‑M2/67‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:1251114‑M2/67‑1 (MQ=255)
                                                                  |                                                                  
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.