| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 777093 | 79 (0.220) | 44 (0.140) +TTTGAGT |
4/98 | NT | 38.9% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
Only 100 of 179 total aligned reads displayed.
GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 | ggtaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:1076544/65‑1 (MQ=14)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:21095927/68‑1 (MQ=39)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:845293/68‑1 (MQ=39)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:5890886/68‑1 (MQ=39)ccAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCTATTGGTGGCAGGTTCGAATCCt < 1:12554664/67‑1 (MQ=11) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAGTTTTAATCAATTGGGCGCAGGTTCGAATCGTgg > 1:20414284/1‑67 (MQ=11) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:23053032/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:24491175/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:27129230/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:6629725/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:2762264/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:19563389/1‑68 (MQ=35) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:5279579/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:24126537/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:14406159/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:27270745/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:17118681/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:13146160/1‑67 (MQ=33) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:7179051/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:7754203/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:15397803/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:9812672/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:18606907/1‑68 (MQ=31) gTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCtttgagta > 1:9093853‑M1/1‑59 (MQ=255) aGTTGGTAGAGCAGTTGACTTTTAATAAATTTGTGGCCGGTTCGGATCtttgagtatcgcagatagca > 1:9118553‑M1/1‑48 (MQ=255) tGGTCGCAGGTTCGAATCtttgagtatcgcagatagtaaaaaagcgcctttagggcgcttttttacat > 1:10457864‑M1/1‑18 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:17343620/1‑68 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:3391792/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:19650538/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:19774023/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:21798034/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:10409146/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:354841/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:3730053/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:9969239/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:12695605/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:13925612/68‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:17854831/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:17441174/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:3440809/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:16366540/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:14221983/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:26605140/67‑1 (MQ=35) gCAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtg > 1:6979515‑M1/1‑13 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:13810486/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:19914401/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:15512969/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCGTTTTTGCTATCTGc > 1:18476435/1‑68 (MQ=25) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:16257486‑M1/1‑11 (MQ=255) ggTGCGAAGCttggagtatcgcagatcgcaaaaaagcgcctttagggcgcttttttacattggtgggg < 1:27988094‑M1/68‑59 (MQ=255) gTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtc > 1:6888411‑M1/1‑9 (MQ=255) ttCGAATCttttagtatcgcatatagcaaaaaagcgcctttagggcgcttttttacattgttgggg < 1:9204073‑M1/66‑59 (MQ=255) ttCGAATCtttgcgtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:20259607‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:13642605‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:1219054‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:23498077‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:10166326‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:16534604‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:4480498‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:11515463‑M1/66‑59 (MQ=255) ttCGAATCCTGCACGACCCACCAATGTAAAAAGGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:12001154/66‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:5169877/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:3477071/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:8581377/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:8802896/1‑66 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:20234847/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:15907763/67‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:23258092/67‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCAGCGAt < 1:21525827/66‑1 (MQ=25) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGC‑TTTTTGCTATCTGCGATAc < 1:13561848/67‑1 (MQ=255) gtCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:7690152/65‑1 (MQ=25) gtCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:23546419/66‑1 (MQ=25) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:21242179‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:11627891‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:4842596‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:20843363‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg < 1:21971709‑M1/67‑61 (MQ=255) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:12970313/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:19094215/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:18737996/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:29750511/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:28920201/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:1477258/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:16143861/67‑1 (MQ=35) cGAATAtttgagtatcgcatatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:25796334‑M1/68‑63 (MQ=255) gAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCa < 1:5733734/68‑1 (MQ=35) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:7499428‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:22490114‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:20656840‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:14102072‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:11348913‑M1/1‑3 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggttggtcgtgcagg < 1:29407205‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:16016592‑M1/1‑2 (MQ=255) tCCTGCACGACCCACCAATTTAAAAAAGCGCCCTAAAGGGGATTTTTTGATATATGCGATACTCAAAg > 1:12758712/1‑68 (MQ=11) tCCTGCACGACCCACCAATTTAAAAAAGCGCCCAAAAGGGGCTTTTTTGCTATAACCGATACTCAAAg > 1:29431314/1‑68 (MQ=11) cttttagtatcgcagatagcaaaaaagcgcctttagtgagcttttttacattggtgggtcgtgcagga < 1:16978726‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:23196325‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:23987546‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:22811855‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:14232673‑M1/68‑68 (MQ=255) | GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |