BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 777093	79 (0.220)	44 (0.140) +TTTGAGT	4/98	NT	38.9%	noncoding (61/76 nt)	lysQ	tRNA‑Lys
*	?	CP009273	= 2514886	NA (NA)	44 (0.140) +TTTGAGT	4/98	NT	38.9%	noncoding (614/1345 nt)	IS186	repeat region

Only 100 of 505 total aligned reads displayed.

GCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT  >  CP009273/2514819‑2514953

gcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt                                                                     >  1:17443654/1‑68 (MQ=255)

 cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAtt                                                                    >  1:11480234/1‑68 (MQ=255)

  gaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAttt                                                                   >  1:7049885/1‑68 (MQ=255)

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:24905024/1‑68 (MQ=255)

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:16562049/1‑68 (MQ=255)

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:26069472/1‑68 (MQ=255)

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:3380807/1‑68 (MQ=255)

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:7905413/1‑68 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:6111583/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:10318025/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:23616763/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:21963415/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:20679906/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:19363322/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:19113739/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:18636139/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:818375/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:9630953/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:12064517/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:12748914/1‑65 (MQ=255)

                 aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    >  1:22563192/1‑68 (MQ=255)

                  cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    <  1:15939025/67‑1 (MQ=255)

                   ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                  <  1:2175569/68‑1 (MQ=255)

                   ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                  <  1:26862328/68‑1 (MQ=255)

                     accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:21065154/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:469471/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:24053478/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:23819750/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:22081251/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:12989564/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:11679979/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:6349804/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:2658856/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:2992092/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:18359000/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:17980492/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:8993640/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:27005670/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:4197980/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:16682205/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:10632418/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:17253562/1‑68 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:24728836/1‑66 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc                                           <  1:16107030/68‑1 (MQ=255)

                           gTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACt                                          >  1:29381223/1‑68 (MQ=255)

                             aaaaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACtt                                         <  1:29161983/67‑1 (MQ=255)

                             aaaaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACtt                                         <  1:23319256/67‑1 (MQ=255)

                             aaaaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTa                                        >  1:28657383/1‑68 (MQ=255)

                               aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc                                      <  1:2956721/68‑1 (MQ=255)

                               aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc                                      <  1:5263511/68‑1 (MQ=255)

                               aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc                                      <  1:27764363/68‑1 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAATTTGCCTGATGCGCTTCACTTAGCa                                     >  1:2276191/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:13954767/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:12290805/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:12519154/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:25159250/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:23058130/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:5546276/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:17567356/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:11026675/1‑68 (MQ=255)

                                 aaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    <  1:1567590/68‑1 (MQ=255)

                                 aaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    >  1:10871341/1‑68 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    >  1:28967511/1‑67 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:4277681/68‑1 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:24302575/68‑1 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:7624374/68‑1 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:16832539/68‑1 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:15283073/68‑1 (MQ=255)

                                    cgcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                 >  1:21222879/1‑68 (MQ=255)

                                     gcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                 <  1:1978488/67‑1 (MQ=255)

                                     gcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                 <  1:17698452/67‑1 (MQ=255)

                                     gcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                 <  1:4415638/67‑1 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAGTTAGCAGACTACTATTTcc                        >  1:9451760/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:27315364/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:13171016/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:20072129/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:1346287/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:1447693/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:3869015/1‑68 (MQ=255)

                                               cgcTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCg                       <  1:2627647/67‑1 (MQ=255)

                                                 cTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCa                    >  1:4798668/1‑68 (MQ=255)

                                                    ttttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAAtt                 <  1:15088181/68‑1 (MQ=255)

                                                      ttGCTATCTTCGATTTGCGAAATTGCCTGATGCGGTTCACTTAGCAGACTACTATTTCCGGCAATTcc               <  1:1412388/68‑1 (MQ=255)

                                                      ttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTcc               <  1:18828686/68‑1 (MQ=255)

                                                      ttGCTATCTGCGATTTGCAAAATCGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTcc               <  1:13765461/68‑1 (MQ=255)

                                                          tATCTGCGATTTGCGAAATTGCCTGATGCTCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc           <  1:215040/68‑1 (MQ=255)

                                                           aTCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGTAATTCCTGtct          <  1:6745126/68‑1 (MQ=255)

                                                           aTCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtct          <  1:1641118/68‑1 (MQ=255)

                                                            tCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtctc         <  1:10011475/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:20828089/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:20298166/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:25448868/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:27909363/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:28333037/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:1483515/68‑1 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:22289927/67‑1 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:25793944/67‑1 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:8584701/67‑1 (MQ=255)

                                                                   tttGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAcc   <  1:16784588/67‑1 (MQ=255)

                                                                   tttGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCt  <  1:3131617/68‑1 (MQ=255)

GCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT  >  CP009273/2514819‑2514953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.