| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1036003 = | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1036035 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
Only 100 of 376 total aligned reads displayed.
GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATA > CP009273/1035936‑1036069 | tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAgg > 1:25037014/1‑66 (MQ=255) tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAgg > 1:29701914/1‑66 (MQ=255) tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGc < 1:12000399/67‑1 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattg < 1:1052192‑M1/1‑1 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattg > 1:2949734‑M1/66‑66 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:18050288‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:18254992‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:4572451‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:17744002‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:3844857‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:2247288‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:10698730‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:23143794‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGc > 1:10342697‑M1/66‑67 (MQ=255) taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcaaatctgacattattgattg < 1:21326916‑M1/1‑1 (MQ=255) aaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGa < 1:17447465‑M1/6‑1 (MQ=255) aatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGAt < 1:12280691‑M1/7‑1 (MQ=255) tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGAt > 1:19518927/1‑67 (MQ=255) atgggattaagatcgctttcatcgatatgtttccgcttttcatatgtgacattattgattGCCTGAt < 1:20095413‑M1/7‑1 (MQ=255) atgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATg > 1:13362030‑M1/61‑68 (MQ=255) ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcg > 1:29277654/1‑67 (MQ=255) ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcg > 1:12544371/1‑67 (MQ=255) ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcg > 1:20911417/1‑67 (MQ=255) tctcCCCCCTTGTGTTGGTATGGCTGGACCCGCGTCGGAAAAGTTAACGAACGTAGGCCTGATgcggc < 1:24666283/68‑1 (MQ=255) tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc < 1:22984227/68‑1 (MQ=255) tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc > 1:16614053/1‑68 (MQ=255) tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc < 1:9040359/68‑1 (MQ=255) tctcCACCCTTGTGATGGTATGGCTGGACCCGCGTCTTAAAAGTTATCGAACGTAGGCCTGATgcggc < 1:14181016/68‑1 (MQ=255) ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc > 1:4371294/1‑67 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:22332837/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:24128122/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:7363822/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:6151274/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:27006264/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:28915046/68‑1 (MQ=255) ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCAGATGCGGCGCa < 1:12638138/68‑1 (MQ=255) ccACCCTTGGGTTGGTATGGCGGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa < 1:23988151/68‑1 (MQ=255) cccTTGTGTTGGTATGGCTGGCCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTa > 1:12409282/1‑68 (MQ=255) cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTa > 1:27762383/1‑68 (MQ=255) cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTa > 1:3331433/1‑68 (MQ=255) cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTa > 1:413465/1‑68 (MQ=255) cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTa > 1:14873251/1‑68 (MQ=255) cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc > 1:28699107/1‑68 (MQ=255) cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc > 1:25281750/1‑68 (MQ=255) cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc > 1:16936319/1‑68 (MQ=255) cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc > 1:19606855/1‑68 (MQ=255) tgtgTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGCACGTAGGCCTGATGCGGCGCATTAgca > 1:5134725/1‑67 (MQ=255) tgtgTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgca > 1:25429690/1‑67 (MQ=255) tgtgTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgca > 1:26566683/1‑67 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:2851713/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:13020335/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:23617060/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:5647706/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:6855690/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:8347664/1‑68 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc < 1:10993454/68‑1 (MQ=255) gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgc > 1:9857672/1‑68 (MQ=255) gtTGGTAGGGCTGGACCCGCGGCTGTAAAGGGACCGAACGTAGGGCTGATGCGGCGCATTAgcagcgc < 1:1286530/68‑1 (MQ=255) tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgca < 1:7116306/67‑1 (MQ=255) tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgca < 1:21229922/67‑1 (MQ=255) tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgca > 1:8735218/1‑67 (MQ=255) tATGGCTGGATCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAg > 1:28200888/1‑68 (MQ=255) tATGGCTGGACCCGCGTCTTAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAg > 1:18857358/1‑68 (MQ=255) tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAg > 1:25893709/1‑68 (MQ=255) tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAg > 1:11321322/1‑68 (MQ=255) aTGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAg > 1:21608374/1‑67 (MQ=255) tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGc < 1:27622239/68‑1 (MQ=255) tgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa < 1:21878778‑M1/34‑1 (MQ=255) cTGGACCCGCGTTTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:1171982/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:28261874/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:20489912/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:5363083/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:4744356/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:16013166/1‑67 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:15730931/68‑1 (MQ=255) aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa < 1:27929142/67‑1 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat < 1:15479479/67‑1 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGGAATCaata > 1:16174039/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:7930984/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:3123030/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:26396170/1‑68 (MQ=255) ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa > 1:19381191/1‑68 (MQ=255) ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa > 1:6699735/1‑68 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:7562768/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:9407429/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:27236662/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:27451048/68‑1 (MQ=255) aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGatat > 1:24368004/1‑68 (MQ=255) aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCGATCAATAATGTCAGATATGa > 1:13632540/1‑68 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:19860125/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg > 1:19199871/1‑68 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:15077791/68‑1 (MQ=255) attgattGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa < 1:27523124‑M1/61‑1 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:7412488/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:16410548/1‑68 (MQ=255) aGGCCTGATGCGGCGCATTAGGATGGGATCTGGGAATCAATAATGTGAGATATGAAAAGCGGAAACa < 1:3182846/67‑1 (MQ=255) aGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat < 1:14433784/68‑1 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata < 1:643565‑M1/67‑1 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata < 1:25981361‑M1/67‑1 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATCAAAAGCGGAAACata < 1:13863264‑M1/67‑1 (MQ=255) | GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATA > CP009273/1035936‑1036069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |