| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1036003 = | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1036035 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
Only 100 of 318 total aligned reads displayed.
GCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > CP009273/1035969‑1036099 | tgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa < 1:21878778‑M1/34‑1 (MQ=255) cTGGACCCGCGTTTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:1171982/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:27680015/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:28000912/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:28232088/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:28261874/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:2407936/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:29591806/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:14464845/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:5363083/1‑67 (MQ=255) cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa > 1:4681770/1‑67 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc > 1:18191668/1‑68 (MQ=255) tGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat < 1:19251596/67‑1 (MQ=255) gggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc < 1:27918587/67‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:13716467/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:25302779/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:15730931/68‑1 (MQ=255) ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca < 1:22413920/68‑1 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat < 1:1234113/67‑1 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGGAATCaata > 1:16174039/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:20271363/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:232880/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:9257117/1‑68 (MQ=255) cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata > 1:22580979/1‑68 (MQ=255) gcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg < 1:1062197/68‑1 (MQ=255) gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGt < 1:3996968/67‑1 (MQ=255) tGAAAAGTTAACGAACGTATGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:666257/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:27236662/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:16066662/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:10497580/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:9407429/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:6761738/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:12805998/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:28821782/68‑1 (MQ=255) tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa < 1:6339252/68‑1 (MQ=255) aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGatat > 1:24368004/1‑68 (MQ=255) aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGatat > 1:26422387/1‑68 (MQ=255) aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata < 1:326477/67‑1 (MQ=255) tctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg < 1:18008005‑M1/52‑1 (MQ=255) aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg < 1:16875182/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:19860125/68‑1 (MQ=255) cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg < 1:27470508/68‑1 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:7412488/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:16410548/1‑68 (MQ=255) aacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa > 1:1648409/1‑68 (MQ=255) gTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc > 1:27523703/1‑68 (MQ=255) tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa > 1:2933002/1‑68 (MQ=255) GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata < 1:19586263‑M1/67‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACatat > 1:23103988‑M1/1‑67 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:7720346‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:17244407‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:1754208‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:17724427‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:27301210‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:26089398‑M1/68‑1 (MQ=255) CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc < 1:18954023‑M1/68‑1 (MQ=255) CTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCg < 1:966708‑M1/68‑1 (MQ=255) CTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCg < 1:1626751‑M1/68‑1 (MQ=255) GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGAt > 1:14164853‑M1/1‑68 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa < 1:14892508‑M1/68‑1 (MQ=255) TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa < 1:14285868‑M1/68‑1 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa > 1:13530094‑M1/1‑68 (MQ=255) GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaa > 1:21410122‑M1/1‑68 (MQ=255) CGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaaa < 1:2616538‑M1/68‑1 (MQ=255) cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg > 1:5068163/1‑68 (MQ=255) cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg > 1:20836416/1‑68 (MQ=255) gcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa < 1:23987464/68‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt < 1:12574358/67‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc < 1:13915005/68‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc < 1:15981421/68‑1 (MQ=255) aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc < 1:10076909/68‑1 (MQ=255) ttAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCt < 1:25976088/68‑1 (MQ=255) aGCATCGCATTAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:21968117/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:20546657/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:29409947/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:751270/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:8560490/1‑68 (MQ=255) aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa > 1:21123241/1‑68 (MQ=255) gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa > 1:24996221/1‑68 (MQ=255) catcgcatcAGGCAATCAATAATGTCAGCTATGAAAAGCGGAAACATATCGATGACAGCGATCTTaa > 1:12999177/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATTTGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:15561459/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:8057578/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:13128163/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:11916/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:3459920/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:2980157/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:14656932/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:15331448/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:2843292/1‑67 (MQ=255) atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt > 1:26829248/1‑67 (MQ=255) tcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCTATCTTAATc > 1:3845487/1‑67 (MQ=255) atcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAtt < 1:6141214‑M2/61‑1 (MQ=255) tcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt > 1:4472392‑M2/7‑68 (MQ=255) tcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt < 1:10900817‑M2/62‑1 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:19995823‑M2/3‑67 (MQ=255) gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:12719314‑M2/3‑67 (MQ=255) cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa < 1:3170072‑M2/65‑1 (MQ=255) cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:7172497‑M2/2‑66 (MQ=255) cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa < 1:25759685‑M2/65‑1 (MQ=255) cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa > 1:18705723‑M2/2‑66 (MQ=255) | GCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > CP009273/1035969‑1036099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |