| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 362 (1.010) | 27 (0.090) | 11/92 | NT | 8.9% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 256 (0.870) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 722 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:3093832‑M1/2‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:26876101‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:16092968‑M1/3‑1 (MQ=255) ttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgc < 1:4996108‑M1/5‑1 (MQ=255) cAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGC < 1:7264957‑M1/68‑1 (MQ=255) tcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcg > 1:26320696‑M1/63‑68 (MQ=255) tcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcg > 1:18329062‑M1/63‑68 (MQ=255) gCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGC > 1:6796859‑M1/1‑68 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:12180692‑M1/7‑1 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:7455078‑M1/7‑1 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:13579359‑M1/61‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCA > 1:13435028‑M1/1‑68 (MQ=255) acaATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATT > 1:7969966‑M1/1‑68 (MQ=255) tcgccagcgtctcgtgcttgatcacaacaccgcccgcattatgcgcagtatgtttgACGGCGcattga < 1:20096879‑M1/12‑3 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:8833537/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:14603376/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:15276320/1‑68 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:27518015/1‑67 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:17879618/1‑67 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:21097521/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:24548394/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:9699493/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:8280670/1‑68 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAg < 1:24694398/68‑1 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAg < 1:27990983/68‑1 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt > 1:13961445/1‑68 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:13066756/68‑1 (MQ=255) ctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:10466747/1‑68 (MQ=255) ttCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt < 1:25015056/67‑1 (MQ=255) tCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgc < 1:24188/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:6597272/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:6367552/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:19728542/1‑68 (MQ=255) cATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCg < 1:21334947/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:3561173/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:25565635/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:9314980/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:20468945/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:17037648/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:17288841/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:6058162/68‑1 (MQ=255) ttCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTa < 1:14410615/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:24034751/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:29248437/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:15476782/1‑67 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:23057115/1‑67 (MQ=255) aCGCCATCAGAATGTCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:4291765/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa > 1:3792876/1‑68 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:29677410/1‑68 (MQ=255) gAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgc < 1:480306‑M2/67‑6 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:19450397‑M2/1‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc < 1:27201726‑M2/68‑9 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:1577191‑M2/1‑60 (MQ=255) tGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:11508794‑M2/68‑10 (MQ=255) gggttcttTACCGGGCTTACGGCGCATTTCGAATAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:2321634/65‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCACTTaatgcgccgt > 1:1642296‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:9090088‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:13767025‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:8630240‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:186105‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:16550472‑M2/1‑58 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:22683561/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:5422410/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26669895/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:23718055/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:27586557/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:18265764/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:28387049/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:28594891/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:3355018/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:20713271/67‑1 (MQ=255) tgcttTACCGGGCTTACGGCGCATTTGGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:1252734/65‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:11023356/68‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:5167243‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:29450656/1‑68 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:4099038/68‑1 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:23546736/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:1007016/68‑1 (MQ=255) cGGGCTAACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:15039758/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:19138896/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:18801583/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:11856256/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:19330097/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:5706877/68‑1 (MQ=255) gtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:2533824‑M1/62‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:22304990/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:25982247/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:16858239/1‑68 (MQ=255) cTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:7742015/67‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:19019398/68‑1 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:2036391‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:12440688‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:21728686‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:11622444‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:22105487‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:1079225‑M1/1‑10 (MQ=255) aCGGCGCATCaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:17635552‑M1/1‑10 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:17509980‑M1/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCGCATaa < 1:12762321‑M1/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTAAATTATTGCGCCGTCAATGATACTGCTCATaa < 1:10218524‑M1/68‑1 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |