| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 362 (1.010) | 27 (0.090) | 11/92 | NT | 8.9% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 256 (0.870) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 576 total aligned reads displayed.
GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 | atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:6829606‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:1246873‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcatcaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:26297643‑M2/2‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:21151902/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:19418827/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:9779539/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:7951933/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:27579341/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:24970357/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:24376343/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:17648415/67‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:22153237/68‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:568410/68‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:27447237/68‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:5167243‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:10265956/68‑1 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:19877694/1‑67 (MQ=255) agtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACAt < 1:20385035‑M2/7‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:17839572/68‑1 (MQ=255) atgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCATACATACt < 1:22221123‑M2/10‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:8210237/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:19138896/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:26727646/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:6165348/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGGTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:15966201/68‑1 (MQ=255) gtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCt < 1:20653224‑M2/13‑1 (MQ=255) tttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:16994019‑M1/64‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:1548235/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:25982247/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:11046984/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:10839478/1‑68 (MQ=255) ttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTc < 1:19046755‑M2/14‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:12323138/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:15121696‑M1/68‑1 (MQ=255) cggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAAt < 1:13501367‑M2/19‑1 (MQ=255) cggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAAt < 1:16670521‑M2/19‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCCAACATACTGCTCATAATg < 1:7094411‑M1/68‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:3317245‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:16241228‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:25643093‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:23823001‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:19281115‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:16409509‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:23506111‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGAGCCGTCAAACATACTGCTCATAATg > 1:20977494‑M1/1‑68 (MQ=255) cggaTTTGGAAAAGCGTGGTGGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGc < 1:28624586/64‑1 (MQ=255) cgcattaattcaatacgcagcaacctcgcttttctaaatgcgccgtCAAACATACTGCTCATAATGc < 1:18720599‑M2/21‑1 (MQ=255) CGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGc > 1:13100353‑M1/1‑67 (MQ=255) ATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGa > 1:20532778‑M1/1‑68 (MQ=255) tCGAAAAGCGTGGTTGCTGCGTTTTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:22496024/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:17496012/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:12048361/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:6675606/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:9230763/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:20220121/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:19636817/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:14167628/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:7825063/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:1045399/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:29180904/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:9501211/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:12529757/68‑1 (MQ=255) gCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa > 1:876224/1‑68 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:5046868/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:27883792/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:21592987/66‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAg < 1:12958326/67‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAg < 1:28827620/67‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAg < 1:4410576/67‑1 (MQ=255) gctgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCAc < 1:11517120/68‑1 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:18188332/1‑68 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:12750053/1‑68 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACg < 1:4035796/67‑1 (MQ=255) gcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag > 1:25309918/1‑68 (MQ=255) gcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag < 1:29614881/68‑1 (MQ=255) cGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag > 1:14834910/1‑67 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:9020497/68‑1 (MQ=255) tCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:852906/1‑68 (MQ=255) tCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:29355690/1‑68 (MQ=255) tCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:29837264/1‑68 (MQ=255) aaTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGc < 1:15869149/68‑1 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:28421982/1‑68 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:23655641/1‑68 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:11678561/1‑68 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa > 1:10054675/1‑68 (MQ=255) tcaatgcgccgtCAAACATACTGCGCATAATGCGGGCGGTGTTGTGATCAAGCACGAGACGCTGGCGa < 1:20096879‑M2/56‑1 (MQ=255) aatgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAAc < 1:18892830‑M2/58‑1 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:26924764‑M2/59‑1 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:22998674‑M2/59‑1 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:3537531‑M2/59‑1 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:7573704‑M2/9‑68 (MQ=255) tgcgacgtCAAACATACTGCTCATAATGCCGGAGGTGTTGTGATCAAGCACGAGATGCTGGCGAACAg > 1:7392494‑M2/9‑68 (MQ=255) gcgcggtCTAACATTCTGCGCATAATGCGGCCGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:24714919‑M2/61‑1 (MQ=255) gcgccttCAAACATACTGCTCATAATGCGGGATGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:17322045‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:1446827‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:28177327‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:13623307‑M2/61‑1 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCTCGAGACGCTGGCGAACAGGa > 1:4854760‑M2/7‑68 (MQ=255) gccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGa < 1:18599615‑M2/62‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:15734491‑M2/65‑1 (MQ=255) | GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |