| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 17 (0.060) | 5/96 | NT | 90.8% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 2 (0.010) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 295 total aligned reads displayed.
GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 | gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:11674268/1‑67 (MQ=31) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCGGGCAAc < 1:26797849/67‑1 (MQ=25) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:17864666/1‑67 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:23980862/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:18649686/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:27070306/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:12122102/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc > 1:2719407/1‑68 (MQ=35) aGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg > 1:11937712/1‑68 (MQ=35) aGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg > 1:21462053/1‑68 (MQ=35) aGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg > 1:23060684/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGATGTGGCTTCCGGCAACGCGt > 1:19917314/1‑68 (MQ=25) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg < 1:29713038/67‑1 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg < 1:2937223/67‑1 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:22543772/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:23250517/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:24827327/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:26071089/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:15832806/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:12511193/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:14706081/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:23715689/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:7784142/1‑68 (MQ=35) tCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtt > 1:17221797/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:26689090/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:5200884/1‑68 (MQ=35) cATCGTGGCATCTCGCTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:29185068/1‑68 (MQ=25) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:6927517/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:28715952/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:19488668/68‑1 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:6080640/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:25328053/1‑68 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:5402038/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:2420392/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:20023569/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:1945001/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:28038523/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:16644361/68‑1 (MQ=35) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:6456672/68‑1 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAAGCGTtatttatt > 1:12614053/1‑66 (MQ=25) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:2787568/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:6820173/67‑1 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:4272989/1‑67 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:4767149/1‑67 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATGTCTGa > 1:24583385/1‑67 (MQ=25) gTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAAc > 1:11424701/1‑67 (MQ=35) tGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCg > 1:7279547/1‑68 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg > 1:2122846/1‑67 (MQ=35) aGATCATCGGGGTAAAACTGTTTATGACGTGGCGTCCGGCAACGAGTTATTTATTTCTGAACTCGGt < 1:503693/67‑1 (MQ=11) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:2057379/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:18213661/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt > 1:13120107/1‑67 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:9702732/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:420988/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:18370829/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:11312953/1‑68 (MQ=35) atcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCg > 1:846089/1‑68 (MQ=35) tcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc < 1:13986507/66‑1 (MQ=35) catcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt < 1:28251312/68‑1 (MQ=35) catcGGGGTAAAACGGTTTATGACGTGGCATCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt < 1:28473843/68‑1 (MQ=25) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:21959844/1‑67 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTAc < 1:10939676/68‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCgg < 1:22727479/67‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:2992533/1‑68 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:19726920/1‑68 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:6558512/1‑68 (MQ=35) gTAAAACGGTTTGTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaa > 1:17403209/1‑68 (MQ=25) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaa > 1:16039867/1‑68 (MQ=35) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa < 1:10280365/67‑1 (MQ=35) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa < 1:1075495/67‑1 (MQ=35) tAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaa < 1:27336213/67‑1 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:2164185/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:2888157/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:23372914/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:567243/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:18798356/68‑1 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:12928267/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:3543077/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:16198787/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:19817909/1‑68 (MQ=35) cGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:24659972/1‑68 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:22143073/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:2017460/68‑1 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:14377625/68‑1 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:29030774/68‑1 (MQ=35) gTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:3756847/67‑1 (MQ=35) ttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:10078386/1‑65 (MQ=35) aTGCCGTGGCTTCCGGCAACGCGGTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:17652736/68‑1 (MQ=255) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:3307481/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:25532269/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:8011832/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:4374967/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:21115720/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:3952071/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:1554558/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:13728793/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:9389849/1‑68 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:20914848/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:6388576/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:13489925/1‑67 (MQ=35) | GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |