| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 17 (0.060) | 5/96 | NT | 90.8% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 2 (0.010) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 173 total aligned reads displayed.
ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 | ttcaagagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:23644414‑M2/1‑1 (MQ=255)ttcaacagtgatgagttatcgtggcatctcgttgaagatcatcgggttaaaacggtttatgacgtggc < 1:19801501‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:26309510‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:23255071‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:21083019‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:23423634‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:13305411‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:5770609‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:1167730‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:19620753‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:824829‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:25820378‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:18996083‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgaggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:635110‑M2/1‑1 (MQ=255) tcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCt > 1:954867‑M2/67‑68 (MQ=255) acaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCt > 1:5438082‑M2/67‑68 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:23377881‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:19534635‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:11817754‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:11398431‑M2/3‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:22527374‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28207831‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28620714‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26090086‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:23837359‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:20798969‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:20420559‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:24128055‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:25120177‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc < 1:3899161‑M2/5‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:25801799‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:19228937‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:25933091‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:18106599‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:9884248‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc < 1:9110923‑M2/5‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13233201‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13490368‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:7787261‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13815527‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:14237266‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:703779‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:14937297‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:15722847‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:15921047‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:17601969‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:17542788‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:5004945‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:16839492‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc < 1:16024654‑M2/5‑1 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:22034762‑M2/63‑68 (MQ=255) acagtgatgagtcatcgtgcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:26941560‑M2/63‑68 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:6770324‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:2292271‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:4824618‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:4475850‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8938654‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8044338‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:7947499‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:2645618‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:28823876‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27207083‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27949755‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:29429059‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:7239957‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:2723588‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16270514‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10343838‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10783350‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10847208‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1103288‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:12186117‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:12330784‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:14428352‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1574953‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:15898138‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16232266‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1940623‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:19616544‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:23456648‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:10087445‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:21533646‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:2463982‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:21106731‑M2/62‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:25770582‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:17104310‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:8609246‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:20734940‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:22433146‑M2/59‑67 (MQ=255) ggggtaaaacggtttatgacgtggCTTCCGGCGCTAGCCAGGTAACATTTTCCGGGAACGGCCCGagg > 1:27033188‑M2/25‑67 (MQ=255) gtaaaacggtttatgacgtggCTTCCGGCGATAACCCGGGAACATTTTACGGTAACGGCCCGAGGTCa > 1:29674285‑M2/22‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTACCGGACCGAGTTCAGaaat > 1:786901‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGGCCGAGTTCAGaaat > 1:20049302‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:6408889‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:10652205‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAAACAGGTAACATTTTCCGGTAACGGACCGCGTGCAGaaat > 1:4398084‑M2/17‑68 (MQ=255) ggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaataa > 1:1486883‑M2/15‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGCCCGATTTAAGAAATAAATAAcgcg > 1:24977216‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:13812389‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:18286904‑M2/7‑68 (MQ=255) | ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |