| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 260 (0.720) | 13 (0.040) | 7/94 | NT | 5.5% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 226 (0.750) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 412 total aligned reads displayed.
AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 | gcacacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttca < 1:23260588‑M1/1‑1 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:7644740/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:17403426/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:15313123/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:21159024/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:21618571/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:24452882/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:26997630/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:6974774/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:44839/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:5341181/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:18722368/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:15731506/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:12712790/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:26027134/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:14877141/1‑67 (MQ=255) acacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc > 1:12233459‑M1/65‑68 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:1181363‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:18884072‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:19364824‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:5706449‑M1/4‑1 (MQ=255) cGGCATACTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgc < 1:28106240/66‑1 (MQ=255) cGGCATAATGCGCGGTAGCTGACAAACTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgcc < 1:18503927/67‑1 (MQ=255) acaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccg < 1:3685058‑M1/5‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:2750571‑M1/7‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCTAAGGTGTGCCTGCAAGCCGCCGt < 1:96236/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGccgccg > 1:27926290/1‑67 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:21992358/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:24960856/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:28902686/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:16041007/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:23816052/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:14473925/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:24873725/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:4756114/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:28273874/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:29457706/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:20381242/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:24318955/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGGGCCTGCAAGCCGCCGt < 1:1783580/68‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:12167186‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:13335389‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:11469961‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:7833055‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:8739386‑M1/9‑1 (MQ=255) aaTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCt < 1:4099136/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTAtt > 1:6051586/1‑67 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:20982579/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:22683573/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:14080797/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:19806888/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:10629828/68‑1 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:23460231/1‑68 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaaa < 1:17310939/67‑1 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg > 1:22208622/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:13760709/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:1091319/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:2515761/1‑68 (MQ=255) aaCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGgaga > 1:16437715/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:26715892/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:11421622/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:3315298/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata < 1:8847863/68‑1 (MQ=255) aTAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAttttt > 1:1690628/1‑68 (MQ=255) aaaTTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTac > 1:1588338/1‑68 (MQ=255) aggtcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGatattttttcg < 1:8345049‑M1/38‑4 (MQ=255) aaTTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacg < 1:17725201/68‑1 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTa > 1:19518501/1‑40 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:6547756/1‑68 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:10364037‑M1/40‑1 (MQ=255) ctcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacg > 1:29080656/1‑67 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:6770314/1‑68 (MQ=255) ctcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:20128052‑M1/46‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:3038115/68‑1 (MQ=255) ggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg > 1:13060937/1‑68 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:10295717/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:12413146/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:5016874/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:11238082/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:1280353/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:24701086/67‑1 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:29241365/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:19146446/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:1824141/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:20850614/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:5119762/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:6362833/66‑1 (MQ=255) ggtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:8569024/65‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:722680/68‑1 (MQ=255) ccTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:24150887/1‑67 (MQ=255) tgttcAGCCGGCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc < 1:21288704‑M1/63‑1 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:1000180/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:14273028/1‑68 (MQ=255) tGCAAGCCGCCTTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:20503468/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg > 1:28438246/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg > 1:27830525/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg > 1:25681527/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:27338071/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:9255005/68‑1 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAg < 1:26435911‑M1/68‑1 (MQ=255) | AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |