| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2691481 | 342 (0.950) | 35 (0.110) | 10/100 | NT | 9.7% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 348 (1.080) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
Only 100 of 567 total aligned reads displayed.
CGACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGA > CP009273/2691414‑2691547 | aCCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc > 1:15651499/1‑68 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg > 1:23091528/1‑68 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:14925710/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:13563625/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:17065122/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCAAAGCCACGCTGAATTTGGCTGGCGATAAg < 1:25998572/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa < 1:26729887/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:24346865/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:11573983/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:7170028/1‑68 (MQ=255) tGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCCCGCTGAATTTGGCTGGCGATAAGAtt > 1:22286286/1‑68 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:28695432/1‑67 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:18808012/1‑67 (MQ=255) cccAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTaa > 1:7204063/1‑67 (MQ=255) cccAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAAc < 1:18044094/68‑1 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:28975775/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:29742345/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:29101648/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:4554199/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:28322615/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:26208734/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:10194564/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:10595045/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:14438494/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:6529367/1‑68 (MQ=255) cAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgc < 1:29413985/66‑1 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca < 1:25612055‑M2/68‑3 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:6117408‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:16138449‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:1200202‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:3185083‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:12647776‑M2/1‑65 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:16266258‑M2/1‑64 (MQ=255) cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAgg < 1:21175025/68‑1 (MQ=255) gTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAggg < 1:25725885/68‑1 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa > 1:20704354/1‑68 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:8611981/68‑1 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:6177492/68‑1 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGccgcgggtttatcttttcgccagccaaattctgcgt > 1:10074331‑M1/1‑32 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgt > 1:22386429‑M1/1‑32 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:17248793/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:23647448/1‑68 (MQ=255) ccAACCACCATAGCCCCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtg > 1:26415383‑M2/1‑51 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtg > 1:13843015‑M2/1‑51 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:4092155/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:27234370/68‑1 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtgg > 1:1070116‑M2/1‑50 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtgg > 1:26905575‑M2/1‑50 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa < 1:13089324/68‑1 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa < 1:7316110/68‑1 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGCATCgca < 1:21565745/68‑3 (MQ=255) aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggc > 1:15198879‑M2/1‑49 (MQ=255) accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAAt > 1:5851104/1‑68 (MQ=255) accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAAt > 1:19730414/1‑68 (MQ=255) caccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:24770806/1‑68 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGGAGCCAGGGCGTATCGAAATaa > 1:20090200/1‑67 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:17600742/1‑67 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:15454439/1‑67 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:8833826/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:27916815/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:9556786/1‑68 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:5141893/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:20197657/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:742485/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:22716028/1‑67 (MQ=255) ccACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcggggctatggtggttg > 1:3978489‑M1/1‑18 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:25390799/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAACGCTTc > 1:11772494/1‑68 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgg > 1:14131604‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgg > 1:9214108‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgg > 1:5335388‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:7795756/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:8186583/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:19871057/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:19367063/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:13653980/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:18383565/1‑68 (MQ=255) tGAATTTGGCTGccgcgggtttatcttatcgccagccaaattcagcgtggctatgggggttgggtatt > 1:19024566‑M1/1‑12 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:1238730/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:3817345/68‑1 (MQ=255) tttGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGc < 1:14790924/68‑1 (MQ=255) ggctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGc < 1:19544824/68‑1 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:25045676/1‑68 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:4405764/1‑68 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:22005223/1‑68 (MQ=255) gctcgcGAAAAGATTAACCCGAGGCAGCCAGGGAGTATCGAAAAAAACAGCTTCAACCAGCGGCTGc > 1:10981091/1‑67 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtgggtatggtggttgggtattgacgatgc > 1:27994928‑M1/1‑4 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:27000798‑M1/1‑4 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:13474572‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:11449674‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:23328651‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:2110072‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:4720746‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:3376150‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:6733487‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:3597353‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:16058841‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:177634‑M1/1‑3 (MQ=255) tGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgt > 1:16580322‑M1/1‑2 (MQ=255) tGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgt > 1:24033083‑M1/1‑2 (MQ=255) | CGACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGA > CP009273/2691414‑2691547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |