| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 356 (0.990) | 36 (0.130) | 13/88 | NT | 11.8% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 256 (0.910) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 523 total aligned reads displayed.
GTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCA > CP009273/3920712‑3920843 | attacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcggg < 1:2401252‑M1/2‑1 (MQ=255) ttacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgggg > 1:19425421‑M1/66‑68 (MQ=255) ttacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgggg > 1:13954370‑M1/66‑68 (MQ=255) ttacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgggg > 1:12859744‑M1/66‑68 (MQ=255) tCGAAGTGTTTCATTCACTGGATAAGTGGAAACGTCAGACCTTAGGGCAACACTACTTCAGCGCGGGc < 1:462593/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:9080431/1‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:23822259/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:27317451/1‑68 (MQ=255) gcGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:5013236/67‑1 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa < 1:2910248‑M1/6‑1 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa < 1:12638210‑M1/6‑1 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa > 1:11010977‑M1/63‑68 (MQ=255) gcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGaa < 1:8469047‑M1/7‑1 (MQ=255) cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg < 1:15731375‑M1/8‑1 (MQ=255) aGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAg > 1:3909171/1‑68 (MQ=255) gttcccagtcccactggtcaacatcgaccgagtgcaacggagaaagacgggcttcatcgGGGCGAAgg > 1:17199333‑M1/60‑68 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:22331476‑M1/60‑68 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:11735492‑M1/60‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:14755165/1‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:20419931‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:2351239‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:28311373‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:8393084‑M1/58‑68 (MQ=255) tcccagtcccactgggcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:1200001‑M1/58‑68 (MQ=255) tcccagtcccactgggcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:12221592‑M1/58‑68 (MQ=255) gggtcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:10777018/63‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTCGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:16933665/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:26917760/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:21483745/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:718873/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:15968468/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:26490535/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:9477121/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:6487206/68‑1 (MQ=255) ggTGCATTCGCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:13371560/66‑1 (MQ=255) cccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCt < 1:20134915‑M1/12‑1 (MQ=255) cccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCt < 1:21310119‑M1/12‑1 (MQ=255) accagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatggGTGCGAAGGGCt < 1:29202912‑M1/12‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGTCGAAGGGCTGt < 1:28700302/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:15281709/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:27911586/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:3410346/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:21942230/68‑1 (MQ=255) cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa < 1:5675155/68‑1 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:4170423/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac < 1:8712480/68‑1 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:10588216/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:24423492/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCAGTacac > 1:27574662/1‑68 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:25327199/1‑67 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACg < 1:12340275/68‑1 (MQ=255) cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca < 1:22517134/68‑1 (MQ=255) cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca < 1:23395933/68‑1 (MQ=255) cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca < 1:12713216/68‑1 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca < 1:29746622/68‑1 (MQ=255) gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg < 1:5133582/67‑1 (MQ=255) aGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGaaa > 1:25804449/1‑68 (MQ=255) aGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGaaa > 1:20882171/1‑68 (MQ=255) tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAg > 1:13411303/1‑67 (MQ=255) accgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCCCATGAAAGCCCTTc < 1:23923523‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGCCCATGAACGCCCTTc < 1:1812361‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGCACATGAacgcccgtc < 1:18414126‑M1/35‑4 (MQ=255) cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc > 1:5927652/1‑67 (MQ=255) cgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGCGCATGAAAGCCCTTCg < 1:2618736‑M1/36‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:21065807/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:10377569/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:7612669/1‑68 (MQ=255) ggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGCCCCTGAAAGGCCTTCGGCC‑CGGTGaa < 1:15101884‑M1/46‑1 (MQ=255) ggCAACACGACTTCAGCGCGGGCGAAGGGCAGTACACGCACATGAAATCCCTTCTCCC‑CCATGaata > 1:381501/1‑65 (MQ=255) gCACCACGACTTCAGCGCGGGCGCAGGGCGGAACACGCACATGAAAGCCCTGCGCCCGCGCTGAAgt < 1:14360103/67‑2 (MQ=19) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:5494056/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:25025649/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:29536846/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:7835138/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:13665501/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:4032306/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:443277/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGCAAACGCACATGAAAGCCCTTCGCCC‑CGAGGAAGAcc > 1:672000/1‑68 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc < 1:1670528/67‑1 (MQ=255) aagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:28850625‑M1/52‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:22165139/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:1974473/68‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGGCCGGCtt < 1:6082671‑M1/55‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTACGCCC‑CGATGAAGAccgtgtt < 1:6417538‑M1/55‑4 (MQ=255) acGACTTCAGCGCGGGCTAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAAGAAGACCGACtt > 1:1634499/1‑68 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:20648049/1‑68 (MQ=255) cTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTtct < 1:21650376/67‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:25565384/68‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:7469132/68‑1 (MQ=255) cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGt < 1:17963625/68‑1 (MQ=255) tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTg < 1:18946217‑M1/64‑1 (MQ=255) tcgGGGCGAAGGGCAGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCGTTCTCCGTTGc < 1:814600‑M1/65‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:28514555/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:23218446/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:22948665/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:11502001/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:21205398/1‑68 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTg < 1:2477799/66‑1 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCa < 1:14195198/68‑1 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCa < 1:27378281/68‑1 (MQ=255) | GTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCA > CP009273/3920712‑3920843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |