| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 356 (0.990) | 36 (0.130) | 13/88 | NT | 11.8% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 256 (0.910) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 658 total aligned reads displayed.
ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 | aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa > 1:5379916/1‑68 (MQ=255) gcaccggacaacgacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa < 1:27517649‑M2/3‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:26689491/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:10431136/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:19906389/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:23966559/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:28923221/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:7612669/1‑68 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAg > 1:29479149/1‑67 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAg > 1:12332439/1‑67 (MQ=255) ggCAACACGACTTCAGCGCGGGCGAAGGGCAGTACACGCACATGAAATCCCTTCTCCC‑CCATGaata > 1:381501/1‑65 (MQ=255) agaaagacggtcttcatcggggcgcAGGGGTGTTCACGCACATGAAAGCCCTTCGCCC‑CGATGAAGa < 1:19663790‑M1/42‑1 (MQ=255) gCACCACGACTTCAGCGCGGGCGCAGGGCGGAACACGCACATGAAAGCCCTGCGCCCGCGCTGAAgt < 1:14360103/67‑2 (MQ=19) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:15005601/1‑68 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:3996955/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:28385422/68‑1 (MQ=255) aacacggtcttcatcggggcgtagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGt < 1:6417538‑M2/13‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTTCACGGCCATGAAAGCCCGTCGCCC‑CGATGAAGACCGTCtt < 1:7284085‑M1/55‑1 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:20648049/1‑68 (MQ=255) ggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCGTCGCCC‑CGATGAAGACCGTgtttg < 1:2732283‑M1/57‑2 (MQ=255) ggtctacatcgggccgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTtc < 1:8932844‑M2/18‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACTCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc > 1:13408519/1‑68 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:14738622/68‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:25565384/68‑1 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCg < 1:22146914/68‑1 (MQ=255) tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTg < 1:18946217‑M1/64‑1 (MQ=255) tcgGGGCGAAGGGCAGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCGTTCTCCGTTGc < 1:814600‑M1/65‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:21205398/1‑68 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCa < 1:14195198/68‑1 (MQ=255) ggcgcAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGGTGCACTc < 1:22425031‑M1/63‑1 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCg < 1:11400064‑M1/68‑1 (MQ=255) CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCg > 1:8347322‑M1/1‑67 (MQ=255) gaagggctttcatgtgcgggaaccgccctcCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:18380167‑M2/37‑1 (MQ=255) cgacgggcgttcaggggcgggtaccgcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:4216915‑M2/32‑1 (MQ=255) GAAGGGCTGTACACGCACTTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:10988758‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGATTGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:15421757‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAACGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:23154026‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑TGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:4441937‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:28825961‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:693715‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:23381511‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:600015‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:1690727‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:15846998‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:25893697‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:20377852‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:363080‑M1/1‑68 (MQ=255) gaagggctttcatttgcgtgtacatccgttcgccgCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:27823745‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:12657820‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:13184494‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:15216658‑M2/32‑1 (MQ=255) gaagggctttcatgtgcgtgcacaccccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:17597778‑M2/32‑1 (MQ=255) gaagggctttcatgggcgtgaacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:21392225‑M2/32‑1 (MQ=255) gaagggcttgcatgtgcgggtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:25132364‑M2/32‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:4587889‑M1/68‑1 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:28038124‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:5586016‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:22645145‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:11980667‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:27048851‑M1/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTGTATGTTGa > 1:16345567/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:1716919/1‑67 (MQ=255) cacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTTTATGTTGAcc > 1:21594424/1‑68 (MQ=255) cacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc > 1:24312222/1‑68 (MQ=255) cacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc > 1:21921240/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGCCCa > 1:15661820/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa > 1:9642727/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa < 1:24483337/68‑1 (MQ=255) acGCACACTAAAGGCCGTCCCCC‑CGTTGAAGACCGTCTTTCCCCGTTGCACTCGGTCTATGTTGACCa < 1:6695816/68‑1 (MQ=255) cGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAg > 1:7504468/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:26104953/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:13954633/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:23632467/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:5173150/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:10788409/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:24074508/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:8500823/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:1062362/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCAA‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:13784388/1‑68 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg < 1:20958038/68‑1 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg < 1:18644743/68‑1 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg > 1:16727744/1‑68 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:11702563/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:12231179/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:11198459/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:27432014/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:22966672/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:490016/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:10030404/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:24891546/68‑1 (MQ=255) aaGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg < 1:17960680/68‑1 (MQ=255) aaGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATCTTGACCAGTGGGACTgg > 1:5760951/1‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:19363065‑M2/12‑68 (MQ=255) ccTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCCCTGGGGGTAAGTTGACCAGTGGGGCGGGGAAc > 1:3246809/1‑68 (MQ=255) cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg < 1:9198329‑M2/60‑1 (MQ=255) cttcccccCGATGAAGACCGTCTTTCCCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg < 1:29733576‑M2/60‑1 (MQ=255) tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 1:28606460‑M2/62‑1 (MQ=255) gcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTa < 1:12511743‑M2/64‑1 (MQ=255) cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa > 1:12859744‑M2/4‑68 (MQ=255) cGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATgg < 1:29197712/68‑1 (MQ=255) | ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |