| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4049856 = | NA (NA) | 11 (0.040) | 5/92 | NT | 5.0% | noncoding (26/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4049890 = | 208 (0.700) | noncoding (60/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 621 total aligned reads displayed.
AAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGT > CP009273/4049789‑4049922 | aGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg < 1:24531448/68‑1 (MQ=255) aGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg < 1:25555776/68‑1 (MQ=255) gCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCCCCTGCTCCgg > 1:15075767/1‑67 (MQ=255) gCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg > 1:9361237/1‑67 (MQ=255) gCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg > 1:4229122/1‑67 (MQ=255) gCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg > 1:7958120/1‑67 (MQ=255) gCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCgg > 1:2859928/1‑67 (MQ=255) ctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 1:15830155‑M1/63‑67 (MQ=255) ctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 1:16384183‑M1/63‑67 (MQ=255) ctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 1:13795702‑M1/63‑67 (MQ=255) ctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 1:13513081‑M1/63‑67 (MQ=255) ctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 1:23426228‑M1/63‑67 (MQ=255) ctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCt > 1:6331154‑M1/61‑68 (MQ=255) ccATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGc < 1:27117147/66‑1 (MQ=255) ccATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGc < 1:29136101/66‑1 (MQ=255) ccATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCt < 1:5351237/68‑1 (MQ=255) ccATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCt < 1:22871665/68‑1 (MQ=255) ggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCTAc > 1:8673635‑M1/59‑68 (MQ=255) aTGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc < 1:20818967/68‑1 (MQ=255) tGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAcc < 1:2592974/68‑1 (MQ=255) gcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCTAc < 1:18948927‑M1/10‑1 (MQ=255) gcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCTAc < 1:10001858‑M1/10‑1 (MQ=255) gcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCTAc < 1:28148150‑M1/10‑1 (MQ=255) agagATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca > 1:821918/1‑68 (MQ=255) agagATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcac < 1:11860401/67‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:5046859/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:26025851/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:5824539/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:6187662/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:6470753/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:184438/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:21051196/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcaca < 1:19574222/65‑1 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca > 1:26502125/1‑68 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca > 1:11410429/1‑68 (MQ=255) gaTGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatca > 1:20659943/1‑68 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatcat < 1:983003/67‑1 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatcat < 1:19430471/67‑1 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACatcatc < 1:19801150/68‑1 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACatcatc > 1:28320780/1‑68 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACatcatc < 1:15646201/68‑1 (MQ=255) tGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACatcatc < 1:5475567/68‑1 (MQ=255) ggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAc < 1:7265728/68‑1 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGCGCGACTCACCTGCTCCGGCCTACCACATCATCAcc > 1:12101422/1‑68 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAcc > 1:3857224/1‑68 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAcc > 1:4418349/1‑68 (MQ=255) tACATATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:10245343/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGCCTCACCTGCTCCTGCCTACCACATCATCACCgt < 1:20295494/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:29444698/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:26788205/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:10593118/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:21609883/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:27543183/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCgt < 1:21887846/68‑1 (MQ=255) tACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCg < 1:778792/67‑1 (MQ=255) aGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa > 1:3474347/1‑68 (MQ=255) aGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa > 1:17696059/1‑68 (MQ=255) aGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa > 1:1408610/1‑68 (MQ=255) aGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTa > 1:16107336/1‑68 (MQ=255) gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:10460170/1‑68 (MQ=255) gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:1461172/1‑68 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:7062907/1‑67 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAgg < 1:14991625/67‑1 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAgg < 1:8513663/67‑1 (MQ=255) gCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCg > 1:2434497/1‑68 (MQ=255) gCTGACAAACTTCACGTTGGAGAGCGACCCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCg > 1:22447699/1‑68 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTTCTCCGGCCTACCACATCATCACCGTGTAGGCCgg < 1:8966722/67‑1 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCgg < 1:11520389/67‑1 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCgg < 1:3118495/67‑1 (MQ=255) gACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGAt > 1:12802295/1‑68 (MQ=255) gACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGAt > 1:22198804/1‑68 (MQ=255) cAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATaa > 1:15429091/1‑68 (MQ=255) cAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATaa > 1:10921988/1‑68 (MQ=255) aaaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg < 1:19216149/68‑1 (MQ=255) aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg > 1:28904433/1‑67 (MQ=255) aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg > 1:17278837/1‑67 (MQ=255) ttGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGAAGCATTTGc > 1:25016432/1‑68 (MQ=255) tGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGc < 1:16767821/67‑1 (MQ=255) agagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc > 1:5723563/1‑67 (MQ=255) gagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg < 1:26322615/67‑1 (MQ=255) agCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:23311736/1‑68 (MQ=255) agCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:11206356/1‑68 (MQ=255) gCGAGTCACCTGCTCCGGCCTACCACATCATCACCGTGTCGGCCGGATAAGACGCATTTGCGTCGCa < 1:18244417/67‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGCCGCATTTGCGTCGCa > 1:21509948/1‑67 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:17864935/1‑67 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATAATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:492041/1‑67 (MQ=255) gACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc > 1:20102695/1‑68 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:16988799/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:4137243/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:18649082/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:9243366/68‑1 (MQ=255) tCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGc < 1:23958254/68‑1 (MQ=255) cgtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCg < 1:27885145‑M1/61‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt < 1:6935743/68‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt > 1:13077806/1‑68 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt < 1:1814672‑M1/44‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:24808655‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:25211870‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:13230175‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:3580551‑M1/1‑67 (MQ=255) | AAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGT > CP009273/4049789‑4049922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |