| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4049856 = | NA (NA) | 11 (0.040) | 5/92 | NT | 5.0% | noncoding (26/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 4049890 = | 208 (0.700) | noncoding (60/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 583 total aligned reads displayed.
GACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGC > CP009273/4049823‑4049957 | cAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATaa > 1:15429091/1‑68 (MQ=255) cAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATa < 1:18324903/67‑1 (MQ=255) aaaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg < 1:11500022/68‑1 (MQ=255) aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg > 1:28904433/1‑67 (MQ=255) ttCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGc > 1:2668195/1‑68 (MQ=255) ttCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGc > 1:8450044/1‑68 (MQ=255) tCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCa < 1:12036587/68‑1 (MQ=255) ttGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGc > 1:5246365/1‑68 (MQ=255) ggAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCg > 1:17774778/1‑67 (MQ=255) gagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg < 1:26322615/67‑1 (MQ=255) agCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:11206356/1‑68 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:12194053/1‑67 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa < 1:14240659/67‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATAATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCa > 1:492041/1‑67 (MQ=255) gACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc > 1:20102695/1‑68 (MQ=255) gACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc > 1:9074186/1‑68 (MQ=255) tgcgtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCg < 1:22230257‑M1/58‑1 (MQ=255) tgcgtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCg < 1:23329379‑M1/58‑1 (MQ=255) tgcggcttatccggcctacacggtgatgatgtggtaggccgtaTAAGACGCATTTGCGTCGCATCCgg < 1:28311743‑M2/25‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:25062488/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:16988799/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:19311283/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:28180306/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:14929118/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCgg < 1:13175106/68‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt < 1:6350043/68‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt < 1:6935743/68‑1 (MQ=255) ccTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTg > 1:13992194/1‑68 (MQ=255) tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt > 1:4305757/1‑68 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:25211870‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:2443247‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:23686907‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:3499742‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:23167338‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:10238188‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:10699349‑M1/67‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:27677354‑M1/66‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:25786564‑M1/66‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:392025‑M1/1‑68 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:5512467‑M1/1‑68 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:17374510‑M1/1‑68 (MQ=255) CGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCt < 1:20352767‑M1/68‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:9749688‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:3071406‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:17206748‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:1094491‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGAGTCGCATCCGGCGTGATGTGCTTg < 1:22332658‑M1/67‑1 (MQ=255) CTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:19557699‑M1/1‑68 (MQ=255) CTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:29443107‑M1/1‑68 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg > 1:9347351/1‑68 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg > 1:1347367/1‑68 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg > 1:16080311/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGTTAACACGCATTTGCATCGCATCCGGCGTGATGTGCAAGCCACCgc > 1:28694140/1‑67 (MQ=37) catcatCACCTTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:29163915/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTTATGTGCTTGCCACCGATc < 1:5884850/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:20935990/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:27155832/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:21944733/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:16466753/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:8101691/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:2416744/68‑1 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGCTccc > 1:7843678/1‑68 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:22752206/1‑68 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa > 1:1289947/1‑68 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa > 1:23907411/1‑68 (MQ=255) tcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAg < 1:24738814/68‑1 (MQ=255) tcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAg > 1:668783/1‑68 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:4727060/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:12766554/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:5019103/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:19703512/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:18621166/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:25352739/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:18099251/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:24595567/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:23426100/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGATTGCCACCGACCCAAgg > 1:16745002/1‑67 (MQ=37) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGAGATGTGCTTGCCACCGATACCAgg > 1:13754570/1‑67 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:24922884/1‑65 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTg < 1:3335514/68‑1 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTg < 1:7341734/68‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGcc > 1:8673635‑M2/11‑68 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGcc > 1:26052526‑M2/11‑68 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:18948927‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:10001858‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:18226185‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:12371802‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:15796959‑M2/57‑1 (MQ=255) taggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa > 1:21617023‑M2/10‑68 (MQ=255) ggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCaga > 1:26918398‑M2/8‑68 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCCGGCCTGCCagag > 1:27914335‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag < 1:5696941‑M2/62‑1 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:6253289‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:16259030‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:7126378‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:22128215‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:15050216‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:21421372‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:28554945‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCGTGCCACCGATCCCAGGCCTGCCagag > 1:11769741‑M2/6‑67 (MQ=255) | GACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGC > CP009273/4049823‑4049957 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |