| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 375 (1.040) | 26 (0.090) | 10/94 | NT | 8.9% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 215 (0.710) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 505 total aligned reads displayed.
CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGG > CP009273/4061000‑4061134 | ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:10004880‑M1/66‑68 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:4400022‑M1/66‑68 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:7084280‑M1/66‑68 (MQ=255) gcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc < 1:25807517‑M1/3‑1 (MQ=255) tGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgcg < 1:17834874/67‑1 (MQ=255) gTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgca < 1:7520053/68‑1 (MQ=255) gTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgca < 1:14572634/68‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgcgc > 1:25307419‑M1/63‑67 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca < 1:6338942‑M1/6‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca < 1:28023584‑M1/6‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca < 1:9720574‑M1/6‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca < 1:15442058‑M1/6‑1 (MQ=255) tgaccggacatggcctgtaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:18819548‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:6930705‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:2708214‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:20793471‑M1/61‑68 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagc‑a < 1:6523561/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagc‑a < 1:22816748/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagc‑a < 1:18639607/68‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagc‑agcagc < 1:20574896/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagc‑agcagc < 1:29388154/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagc‑agcagc > 1:3535883/1‑67 (MQ=255) ggTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGctct > 1:5087870/1‑68 (MQ=255) tACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCttt < 1:22538316/67‑1 (MQ=255) tACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCttt < 1:25106785/67‑1 (MQ=255) ttCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTtgctgc > 1:11641775/1‑68 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTtgcggc > 1:18407231/1‑67 (MQ=255) cGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTgcgc < 1:10380629/68‑1 (MQ=255) tGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCt > 1:19010297/1‑67 (MQ=255) gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTc > 1:10578775/1‑68 (MQ=255) gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTc > 1:1807596/1‑68 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:3157233/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:9535546/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:22308759/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:21893413/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:26665475/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:27388258/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:11115785/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:4682155/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:20130066/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:19966112/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:1623941/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAt < 1:17368005/67‑1 (MQ=255) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAAAGAGCT‑GCTGCTGCGCTTCAtc > 1:5907482/1‑67 (MQ=18) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAtc > 1:27626783/1‑67 (MQ=255) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCAtc > 1:28952627/1‑67 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCa < 1:23903793/68‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:26365630/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:1398293/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:15220740/67‑1 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAAc < 1:21310969/68‑1 (MQ=255) catcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACa < 1:19601919/68‑1 (MQ=255) atcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAg < 1:27810386/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:24307464/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:9325015/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:249236/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:8428116/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:22948846/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:15918317/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:15008172/68‑1 (MQ=255) cggttacaccaccctgtttgagctgaAGCGCCGC‑AGCAGCTCTTTGCGGCGGTTGATCTCAAACAggg < 1:29071539‑M1/42‑1 (MQ=255) cGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAggg > 1:8898135/1‑68 (MQ=255) cGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAggg < 1:2880697/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt < 1:7282648/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:5413209/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:24483273/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:11987651/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt < 1:25707510/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:22178499/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:28424322/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:19791937/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtg < 1:377539/67‑1 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtg < 1:23222343/67‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:26742762/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:1916392/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:5536792/68‑1 (MQ=255) gAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGgtgt < 1:5323619/68‑1 (MQ=255) cgcTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAAcc < 1:13436150/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAATAGGGTGGTGTAACCg < 1:15709274/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:26886883/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:1651599/67‑1 (MQ=255) cctgtttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:20301546‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:13019906‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:11431640‑M1/53‑1 (MQ=255) gtttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCaa < 1:8641565‑M1/57‑1 (MQ=255) ttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:8046450‑M1/59‑1 (MQ=255) ttgagatgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:24664668‑M1/59‑1 (MQ=255) aaTCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCACACAGGGTGGTGTAACCGCCAAt < 1:20913296/67‑1 (MQ=255) aaTCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:10286878/68‑1 (MQ=255) tCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:8138798/68‑1 (MQ=255) tCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:12651345/68‑1 (MQ=255) cACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc > 1:4019860/1‑65 (MQ=255) atgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:23721817‑M1/61‑1 (MQ=255) atgaAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:14420556‑M1/61‑1 (MQ=255) aCCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:1681378/67‑1 (MQ=255) aCCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:12334716/67‑1 (MQ=255) ccAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt > 1:29846477/1‑68 (MQ=255) ccAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:26150276/68‑1 (MQ=255) ccAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:24110908/68‑1 (MQ=255) ccAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:23378708/68‑1 (MQ=255) | CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGC‑AGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGG > CP009273/4061000‑4061134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |