| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4143325 | 134 (0.370) | 9 (0.030) | 5/96 | NT | 6.3% | noncoding (51/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 4143336 | 151 (0.490) | noncoding (62/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 455 total aligned reads displayed.
CAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAG > CP009273/4143258‑4143392 | aGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGa < 1:13713257/68‑1 (MQ=255) gTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg > 1:24596714/1‑68 (MQ=255) gTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAg > 1:28528389/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt > 1:19771252/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGt > 1:3384936/1‑68 (MQ=255) tAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACGGGAGt > 1:5462719/1‑68 (MQ=255) aaCACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGtt < 1:8976651/68‑1 (MQ=255) aaCACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGtt < 1:775414/68‑1 (MQ=255) cacCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg < 1:20226715/68‑1 (MQ=255) cacCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg < 1:4246833/68‑1 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:6582404/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:18363368/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:27547252/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:22287846/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:10509521/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:2572013/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:6953276/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:8455096/1‑67 (MQ=255) acCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTg > 1:8725056/1‑67 (MQ=255) ccAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGc > 1:26417796/1‑68 (MQ=255) aGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAca > 1:2069719‑M2/1‑66 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:14693625‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:12596395‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:17545896‑M2/68‑4 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:29777684‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:10835230‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:5254930‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:11109542‑M2/1‑63 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgc > 1:6167099‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:8006679‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:4634108‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:15399084‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:13322476‑M2/1‑62 (MQ=255) cgatcggATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgcc > 1:10655941‑M2/4‑60 (MQ=255) aGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccg < 1:29304913‑M2/68‑9 (MQ=255) aTAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTCGAGTTTGGCAAcagtgccgcaataa > 1:20058300‑M2/1‑53 (MQ=255) tGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatgtcgg > 1:4583613‑M2/1‑47 (MQ=255) gACATTATTGCGGCACTGGAGTTTGGCAACCGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:11534902/68‑1 (MQ=14) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:7028910/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGAGAGCGCCTTATCCGGCCTACa < 1:16473725/68‑1 (MQ=14) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:14561700/68‑1 (MQ=35) attattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGtt > 1:17834237/1‑68 (MQ=35) ttattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTg > 1:2382783/1‑68 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:1615308/68‑1 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg > 1:2915087/1‑67 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:16860629/68‑1 (MQ=25) ttGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGc > 1:20526432/1‑68 (MQ=35) tGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccga > 1:23446451‑M1/1‑10 (MQ=255) tGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccga > 1:26105235‑M1/1‑10 (MQ=255) tGCGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccga > 1:10947635‑M1/1‑10 (MQ=255) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGct > 1:19350448/1‑67 (MQ=25) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:12065965/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:15793580/1‑68 (MQ=35) gCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTTGGCa > 1:24810554/1‑67 (MQ=25) cGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacct > 1:28725004‑M1/1‑8 (MQ=255) cGGCACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacct > 1:11876671‑M1/1‑8 (MQ=255) ggCACTGttgccaaactccagggccgcaataatgtcggatgcgatacttgcgcatcttatccgacct > 1:23037045‑M1/1‑7 (MQ=255) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:18998558/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:12934490/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:26708849/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTAATCCGGCCTACAGTTGGGCATCg < 1:186114/68‑1 (MQ=25) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGAGCCTTATCCGGCCTACAGTTGGGCAACg > 1:27970199/1‑68 (MQ=255) ggCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:10379243/67‑1 (MQ=25) cACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:4732843‑M1/1‑5 (MQ=255) cACTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctac > 1:2264511‑M1/1‑5 (MQ=255) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:16008309/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:1490003/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:27084359/67‑1 (MQ=35) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:13092531‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:7466532‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:7613065‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:12361563‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:8258743‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:15906100‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca < 1:17141806‑M1/67‑64 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:22800024‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:23256626‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca < 1:21733830‑M1/67‑64 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:21639672‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:27821472‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:24380104‑M1/1‑4 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca < 1:4052730‑M1/67‑64 (MQ=255) aCTGttgccaaactccagtgccgcaataatgtccgatgcgatacttgcgcatcttatccgacctaca < 1:6494488‑M1/67‑64 (MQ=255) aCTGgtgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttttccgacctaca > 1:21373867‑M1/1‑4 (MQ=255) aCTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGtt < 1:23887156/67‑1 (MQ=35) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:9718801‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:7567037‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:15278389‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:153774‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:28899783‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctacacc < 1:24317390‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgcatcttatccgacctaca > 1:29090799‑M1/1‑3 (MQ=255) cTGttgccaaactccagtgccgcaataatgtcggatgcgatacttgcgaatcttatccgacctacacc < 1:25387927‑M1/68‑66 (MQ=255) cTGttgccaaactccagtgccgcaataaagtcggatgcgatacttgcgcatcttatccgacctaca > 1:13590092‑M1/1‑3 (MQ=255) tGGAGTTTGGCAACAGTGCCGGATGCGGCGCTAGCGACTTATCCGGCCTACAGTTGGGCATCGTTTGa < 1:16672505/68‑1 (MQ=255) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:819241/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:22108376/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:582638/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:5170487/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:3297098/68‑1 (MQ=35) | CAAGTAACACCAAAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAG > CP009273/4143258‑4143392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |