| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4143325 | 134 (0.370) | 9 (0.030) | 5/96 | NT | 6.3% | noncoding (51/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 4143336 | 151 (0.490) | noncoding (62/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 300 total aligned reads displayed.
AAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGT > CP009273/4143270‑4143403 | ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCCCTGGAGTTTGGCAAcag < 1:17321687‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:27343503‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:21721583‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:7567037‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:12596395‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:10537580‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:24317390‑M2/68‑4 (MQ=255) ggTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcag < 1:10680920‑M2/68‑4 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:13604610‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt < 1:2017361‑M2/67‑5 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:20332196‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:6507955‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:7466532‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:10835230‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:7674474‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:22561759‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:12361563‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:8258743‑M2/1‑63 (MQ=255) tgtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:22800024‑M2/1‑63 (MQ=255) tgtAGGTCGGAAAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCACcagt > 1:21373867‑M2/1‑63 (MQ=255) tgtAGGGCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagt > 1:8581621‑M2/1‑63 (MQ=255) gtAGGTCGTATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:26227838‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:27824721‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:4634108‑M2/1‑62 (MQ=255) gtAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtg > 1:15399084‑M2/1‑62 (MQ=255) aGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCCCTGGAGTTTGGCAAcagtgcc > 1:23037045‑M2/1‑60 (MQ=255) aGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccg < 1:15305111‑M2/68‑9 (MQ=255) aGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccg > 1:28725004‑M2/1‑60 (MQ=255) ggTCGGATAAGATGCGCAAGTAGCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgc > 1:23487327‑M2/1‑59 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGCCATTATTGCGGCCCTGGAGTTTGGCAAcagtgccgtat < 1:13032491‑M2/68‑12 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:10947635‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:17021356‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:5297022‑M2/1‑57 (MQ=255) tCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgca > 1:4064414‑M2/1‑57 (MQ=255) aTAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataa > 1:24592229‑M2/1‑53 (MQ=255) gcgcAAGTACCGCATCCGACATTATTGCGCCACTGGAGTTTGGCAAccgtgccgcaataatgtcggat > 1:3605309‑M2/1‑46 (MQ=255) tCCGACATTATTGCGGCACTGGAGTTTGGCAAcagtgccgcaataatatcggatgcgatacttgcgca > 1:24802833‑M2/1‑32 (MQ=255) gACATTATTGCGGCACTGGAGTTTGGCAACCGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:11534902/68‑1 (MQ=14) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:3328652/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:20944476/68‑1 (MQ=31) gACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACa < 1:7028910/68‑1 (MQ=31) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:6416846/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:14595661/68‑1 (MQ=35) cATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGt < 1:4686735/68‑1 (MQ=35) ttattGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTg > 1:2382783/1‑68 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg > 1:2881387/1‑68 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:16447878/68‑1 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:13100468/68‑1 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTggg < 1:28111177/68‑1 (MQ=35) attGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgg > 1:11937262/1‑67 (MQ=35) ttGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGc > 1:20526432/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTgggga > 1:16240809/1‑66 (MQ=25) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:23273833/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:4566201/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:29162408/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:5170532/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:12065965/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:19157891/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:14701046/1‑68 (MQ=35) tGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCa > 1:21821787/1‑68 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:26708849/67‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg > 1:26071009/1‑68 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCg < 1:13442588/68‑1 (MQ=35) ggCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTAATCCGGCCTACAGTTGGGCATCg < 1:186114/68‑1 (MQ=25) ggCACTGGAGTTTGGCAACAGCGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATc < 1:10379243/67‑1 (MQ=25) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:797166/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:29097746/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:1490003/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:28366201/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:22224589/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:27084359/67‑1 (MQ=35) cACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGt < 1:16008309/67‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:16548213/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:29485646/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:582638/68‑1 (MQ=35) ggAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg < 1:819241/68‑1 (MQ=35) gAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAg > 1:11143594/1‑67 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCGTCGTTTGAGTc > 1:14103684/1‑68 (MQ=25) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:955725/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:16731845/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:18964156/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:24871948/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:19551501/1‑68 (MQ=35) aGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTATGAGTc > 1:1764532/1‑68 (MQ=25) gTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc < 1:5075856/67‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:3126329/1‑65 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:27730429/1‑65 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTc > 1:19323406/1‑65 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCAc < 1:15807672/67‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCAc < 1:28147834/67‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:18008865/68‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:29009716/68‑1 (MQ=35) ttGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACt < 1:19915242/68‑1 (MQ=35) ggCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgt < 1:25258280/68‑1 (MQ=35) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg > 1:24425647/1‑68 (MQ=40) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg > 1:694085/1‑68 (MQ=40) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg < 1:15255741/68‑1 (MQ=40) aaCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcgg < 1:5981550/68‑1 (MQ=40) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTTGGCATCGTTTGAGTCACTgtcggt < 1:24173289/68‑1 (MQ=255) aCAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTgtcggt < 1:15960029/68‑1 (MQ=40) | AAGGTGTAGGTCGGATAAGATGCGCAAGTATCGCATCCGACATTATTGCGGCACTGGAGTTTGGCAACAGTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAGTTGGGCATCGTTTGAGTCACTGTCGGT > CP009273/4143270‑4143403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |