New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4306574 =148 (0.410)10 (0.030) 7/98 NT 7.4% coding (462/1137 nt) phnM ribophosphonate triphosphate hydrolase
?CP009273 4306632 = 122 (0.390)coding (404/1137 nt) phnM ribophosphonate triphosphate hydrolase

Only 100 of 253 total aligned reads displayed.

CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641
                                                                  |                                                                   
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:21732264/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:20639376/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:25784318/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:7570805/1‑67 (MQ=255)
 atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    <  1:10246895‑M1/2‑1 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaccgcggcgtcaaccgcgcctagcaccgtctgcatctgc                                                                    >  1:20616935‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:3274481‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:29370760‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:24493489‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:17763909‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:186176‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:19463671‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:25619593‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:7187802‑M1/65‑66 (MQ=255)
   gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:19366904/1‑65 (MQ=255)
   gatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt                                                                 >  1:14164512‑M1/64‑68 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACCCCAGCGTCCCCGGCTCGCGCt                                                                 >  1:27517564/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:3911788/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:5790608/1‑67 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:9785235/1‑67 (MQ=255)
    atcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt                                                                 <  1:19707918‑M1/5‑1 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc                                                               >  1:13148796‑M1/62‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:100911/1‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:10807173/1‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:26910856/1‑68 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:16649018/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:1216832/1‑68 (MQ=255)
        agagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCAcc                                                            >  1:16324356‑M2/16‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:268051/1‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:22523451/1‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:1820137/1‑68 (MQ=255)
            gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         <  1:26623123/67‑1 (MQ=255)
            catcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGt                                                         >  1:26421900‑M1/55‑67 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:24901417‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:17084216‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCAACGGCTCGCGCTGCCCCAGttt                                                       >  1:2900994‑M2/11‑68 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCTGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:27937113‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:18937459‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:11422328‑M2/58‑1 (MQ=255)
               ctggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGtttt                                                      >  1:20044942‑M2/9‑67 (MQ=255)
                 ggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCa                                                   >  1:22380285‑M2/7‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:12372579‑M2/4‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:26458923‑M2/4‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:20801316‑M2/4‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:14834856‑M2/4‑68 (MQ=255)
                       ggCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGc                                             <  1:16584999/68‑1 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGc                                       <  1:16810217/67‑1 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:6084657/1‑68 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:28905119/1‑68 (MQ=255)
                               gAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgt                                     <  1:2896406/68‑1 (MQ=255)
                               gAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      <  1:12829171/67‑1 (MQ=255)
                               cgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgt                                     >  1:25462410‑M1/36‑68 (MQ=255)
                                aGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtg                                    >  1:24314060/1‑68 (MQ=255)
                                 gTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtgg                                   >  1:11845632/1‑68 (MQ=255)
                                      ccATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGa                              >  1:23870486/1‑68 (MQ=255)
                                      ccATCAGCGACACCAGCGGCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGtgtg                               <  1:25130570/67‑1 (MQ=255)
                                          cAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:23990733/1‑68 (MQ=255)
                                           aGCGACATCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:5266301/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACTGCGGCAGCGTGGTGTGATGCg                          >  1:2830303/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:3049566/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:29639143/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:11297819/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:11650314/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:6254277/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:689835/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:7798575/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8025761/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28651126/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:4773248/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8180294/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28500442/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:27141454/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28272882/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:27451204/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:14487982/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:15823462/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:16063872/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:26514107/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:14502710/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:16999951/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:23035639/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:21101906/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12091282/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:13592925/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATACg                          >  1:11500785/1‑67 (MQ=255)
                                              gACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAg                      >  1:12653914/1‑68 (MQ=255)
                                               acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt                     >  1:13246766/1‑68 (MQ=255)
                                               acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt                     >  1:21792456/1‑68 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgc                 >  1:3443043/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:4797162/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:8855154/1‑68 (MQ=255)
                                                       gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:10696632/1‑67 (MQ=255)
                                                       gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:4212858/1‑67 (MQ=255)
                                                         cACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca           >  1:23306248/1‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:28381228/1‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:8594336/68‑1 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:14338632/1‑68 (MQ=255)
                                                               cTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     >  1:17552601/1‑68 (MQ=255)
                                                                tCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:15244753/67‑1 (MQ=255)
                                                                  GCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAc  >  1:26034760‑M1/1‑68 (MQ=255)
                                                                  |                                                                   
CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.