| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4328027 = | 177 (0.490) | 13 (0.040) | 8/96 | NT | 6.3% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 235 (0.760) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
Only 100 of 289 total aligned reads displayed.
TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 | gggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:4790257‑M1/1‑1 (MQ=255) ggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:1063417‑M1/1‑1 (MQ=255) ggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:1495823‑M1/1‑1 (MQ=255) ggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:11857083‑M1/1‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:13227539/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:27301106/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:24478320/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:28564723/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:19232987/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:21588822/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:20161759/68‑1 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaagg > 1:17924715‑M1/66‑67 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:7725065‑M1/66‑66 (MQ=255) gactgaaattattgacggtaattaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:23382815‑M1/66‑66 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:1338969‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:29027064‑M1/65‑67 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:16079740‑M1/65‑67 (MQ=255) aCATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt > 1:8970538/1‑68 (MQ=255) aCATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt > 1:20670188/1‑68 (MQ=255) tgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGTa > 1:22352051‑M1/63‑68 (MQ=255) cATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt < 1:6324023/67‑1 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:12781756/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:9722804/1‑68 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:6127214/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:28706401/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:17654414/1‑68 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:11621896/68‑1 (MQ=255) tattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgcaGGCGTAAGGTTa < 1:29285575‑M1/12‑1 (MQ=255) ttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAttt > 1:18095261/1‑68 (MQ=255) gcagcaATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaa < 1:21641365/68‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAAt < 1:3916670/68‑1 (MQ=255) ccacgttatgtgcgtgaaagcgtaaccacttttccgctgaaGGCGTTTTGTTATTTTAACAATTACg < 1:26875293‑M1/26‑1 (MQ=255) ccacgttatgtgcgtgaaagcgtaaccactattccgctgcaGGCGGAATGTTATTTAAACAAGTACg < 1:16928447‑M1/26‑1 (MQ=255) ccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGTAATGTTATTTAAACAATTACg < 1:27925816‑M1/26‑1 (MQ=255) aaaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCa < 1:18508911/67‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:11299983/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:10133658/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:24527765/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:9912421/68‑1 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCtt > 1:18402908/1‑56 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:21344824/1‑68 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg < 1:28032146/68‑1 (MQ=255) tACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTgg < 1:29578411/68‑1 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:11377114/1‑68 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:19617575/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:27346609/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:19518989/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:27825471/1‑67 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGttcc > 1:6263276/1‑64 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:2301914/1‑66 (MQ=255) aaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCt < 1:843474/68‑1 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:12458874/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:27432063/1‑68 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:20929256/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:18879033/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:2413294/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:19098629/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:15894598/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:9230841/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:9613949/1‑67 (MQ=255) actattccgctgaaGGCGTAATGGTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc < 1:4069166‑M1/54‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:29700584/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:6004271/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:22757583/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:14670775/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTc > 1:19832510/1‑67 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:26489634/67‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:16558489/67‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:15225420/67‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:25898118/68‑1 (MQ=255) aaGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGC‑TTCACGca < 1:23706149/68‑1 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:6674828/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:246337/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:13800779/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:3468688/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:10906558/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:17229202/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:17723647/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:21989331/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGGTACGGTTTCACGcaca > 1:21506735/1‑68 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca < 1:7311210/67‑1 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac < 1:10217962/66‑1 (MQ=255) ccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac < 1:24388867/66‑1 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:25667100/68‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:27011708‑M1/63‑1 (MQ=255) tgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:25306390‑M1/63‑1 (MQ=255) ggcggcGTAATGTTATTTAAACAATTACACCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc > 1:23857604/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:5311059/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:7944802/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:1045468/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAAc < 1:5809104/66‑1 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:20324889/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:2176844/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:7521306/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:12922876/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:13543487/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:3204062/1‑68 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:24791931‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:18177136‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTg < 1:758507‑M1/68‑1 (MQ=255) | TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |