| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4603949 = | 163 (0.450) | 5 (0.020) | 4/94 | NT | 3.2% | coding (652/780 nt) | yjjV | putative DNase |
| ? | CP009273 | 4603980 = | 162 (0.540) | coding (683/780 nt) | yjjV | putative DNase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 431 total aligned reads displayed.
AAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAA > CP009273/4603882‑4604014 | ttaagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacg > 1:23743779‑M1/68‑68 (MQ=255)ttaagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacg < 1:8255395‑M1/1‑1 (MQ=255)ttaagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacg < 1:17178873‑M1/1‑1 (MQ=255)aaaaTTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGG < 1:17657356‑M1/68‑1 (MQ=255) taagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacgg < 1:19047132‑M1/2‑1 (MQ=255) taagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacgg < 1:8704770‑M1/2‑1 (MQ=255) taagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacgg < 1:29217912‑M1/2‑1 (MQ=255) aaaTTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGG > 1:12578973‑M1/1‑68 (MQ=255) aagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacggg > 1:10354497‑M1/66‑68 (MQ=255) aagcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacggg > 1:3548567‑M1/66‑68 (MQ=255) agcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGc < 1:13206337‑M1/4‑1 (MQ=255) ttACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCA < 1:4003483‑M1/68‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgccaagcacggcgaacacacGGGCa < 1:18436684‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:20147380‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:17525904‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:1695608‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:16770547‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:23519932‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:19328620‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:1542006‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:8295068‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:13870388‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:4245523‑M1/5‑1 (MQ=255) gcaacgcttgcgcaatctaatccgccggtacccggcgcaactcgcaaagcacggcgaacacacGGGCa < 1:14896446‑M1/5‑1 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg > 1:2337061‑M1/62‑67 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg > 1:25298897‑M1/62‑67 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg > 1:27429381‑M1/62‑67 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg > 1:28103433‑M1/62‑67 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg < 1:18192967‑M1/6‑1 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg > 1:10006498‑M1/62‑67 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg < 1:18613757‑M1/6‑1 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAg < 1:10615274‑M1/6‑1 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGc > 1:20551946‑M1/62‑68 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGc > 1:25613434‑M1/62‑68 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGc > 1:22330778‑M1/62‑68 (MQ=255) aacgcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGc > 1:12175952‑M1/62‑68 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCTGC < 1:17355352‑M1/68‑1 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGC < 1:4463536‑M1/68‑1 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGC < 1:11999028‑M1/68‑1 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGC < 1:27100407‑M1/68‑1 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGC < 1:2664656‑M1/68‑1 (MQ=255) aCCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAG > 1:25782312‑M1/1‑67 (MQ=255) cGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCT > 1:1129182‑M1/1‑68 (MQ=255) cGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCT > 1:28629601‑M1/1‑68 (MQ=255) cGCTGGCATCGTTATTGCTGGAAACCGACGCGAAGGATAAGCCGCTCAACGGTTTACAGGGGCAGCCT > 1:27684992‑M1/1‑68 (MQ=255) gcttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGCCt < 1:3334638‑M1/9‑1 (MQ=255) gCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTa < 1:26549206/68‑1 (MQ=255) cttgcgcaatctcatccgccggttcccggcgcaactcgcaaagcacggcgaacacacGGGCAGCCt < 1:25046322‑M1/9‑1 (MQ=255) cTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTa > 1:29605762/1‑67 (MQ=255) tGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTaa > 1:7199576/1‑67 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGcc < 1:6467101/68‑1 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:6237492/67‑1 (MQ=255) gTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCgg < 1:28256106/68‑1 (MQ=255) tATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGa < 1:16126548/67‑1 (MQ=255) aTTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGc > 1:7806792/1‑68 (MQ=255) ttGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCa > 1:9184971‑M2/1‑67 (MQ=255) ttGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCa > 1:8415017‑M2/1‑67 (MQ=255) tGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:24502427‑M2/68‑3 (MQ=255) tGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:29350425‑M2/68‑3 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCagg > 1:4644442‑M2/1‑65 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCagg > 1:1987427‑M2/1‑65 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:12760757‑M2/67‑3 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:5789962‑M2/67‑3 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:11877115‑M2/67‑3 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:21522407‑M2/67‑3 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGCTTTCAGGGGCAGCCTAACCGCCCGGAGCagg > 1:28738489‑M2/1‑65 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:28530086‑M2/65‑3 (MQ=255) aacccGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGc < 1:14287379/64‑1 (MQ=255) aaaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCATGGGCAGCCTAACCGCCCGGAGCaggctgc > 1:22631091‑M2/1‑60 (MQ=255) aaaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCGGCCTAACCGCCCGGAGCaggctgc > 1:11561304‑M2/1‑60 (MQ=255) aaaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgc > 1:22955750‑M2/1‑60 (MQ=255) ccagACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTACCCGCCCGGAGCAGGCTGCCCg < 1:13350368/65‑1 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgcccc > 1:8909865‑M2/1‑58 (MQ=255) gACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgt > 1:26430847/1‑68 (MQ=255) gACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgt > 1:16423759/1‑68 (MQ=255) cgcgCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgtg < 1:5018594/67‑1 (MQ=255) cgcgCCGCATATGCCGATCAACGGTTTCCAGGGGCAGCCTAACCGCCCGGAGCaggctgcccctgaaa > 1:7943348‑M2/1‑53 (MQ=255) gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggccgcccctgaaaacc > 1:15526339‑M2/1‑50 (MQ=255) gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTc < 1:22870900/67‑1 (MQ=255) gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTc < 1:2435283/67‑1 (MQ=255) gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTc < 1:947092/67‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:28948498/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:2084373/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:16032938/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:15802617/68‑1 (MQ=255) tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt > 1:9855728/1‑68 (MQ=255) tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt > 1:4549644/1‑68 (MQ=255) gCCGCTCAACGGGTTTCAGGGGCAGCCTAACCGCCCGGACCaggctgcccctgaaaaccgttgagcgg > 1:22034167‑M2/1‑41 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:6759198/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:23982490/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:21176231/1‑67 (MQ=255) cGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgc < 1:605258/68‑1 (MQ=255) cGGATTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCGGCCCGTGTGGTCGCCGTGCTTTGCGAGTTgc < 1:29274559/68‑1 (MQ=255) ggTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgc > 1:11467776/1‑67 (MQ=255) ttttCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgcgc < 1:9381922/67‑1 (MQ=255) tCAGGGGCAGCCTAGCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCggg > 1:26091918/1‑68 (MQ=255) cAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGa < 1:24850294/68‑1 (MQ=255) ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa > 1:20402041/1‑67 (MQ=255) ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa > 1:12435480/1‑67 (MQ=255) ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa > 1:11065857/1‑67 (MQ=255) | AAAATTACCGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAA > CP009273/4603882‑4604014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |