New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3613476	NA (NA)	3 (0.010)	3/100	NT	100%	coding (925/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	= 3613512	0 (0.000)					coding (961/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

ATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCG  >  CP009273/3613465‑3613579                                                |                                                                    aTTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccgg                                                  >  1:28243477‑M2/1‑48 (MQ=255) aTTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGcggcaggtaaattctccg                                                   >  1:14537035‑M2/1‑48 (MQ=255)                                 tGGACGCCACGCGGCGcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcag                  <  1:1330480‑M2/67‑52 (MQ=255)                                           gcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        <  1:3957490‑M2/67‑62 (MQ=255)                                           gcggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        <  1:11762726‑M2/67‑62 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagccagacggatgcc     <  1:7317173‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagccagacggatgcc     <  1:21736664‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:2854663‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:523460‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:3813496‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:3690597‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:3278887‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:3266849‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:3018336‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:28727012‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:28619022‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:24010514‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:28418307‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:25112014‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:26167886‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:27663600‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:666633‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:990497‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:9418805‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:8699856‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:8609029‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:7925611‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:765516‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:729276‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:6720975‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:4590879‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:621177‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:6182442‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:6155254‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:6062542‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:5940923‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:25978043‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:5016806‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:15089937‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:18738331‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:18581423‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:18278812‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:18223419‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:17350820‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:17116142‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:17001285‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:16312409‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:23713240‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:15035379‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:14280309‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:13418981‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:12777963‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:12585459‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:11751718‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:11048632‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:10422282‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:23759906‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:22704101‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:22353833‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:22078599‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:21646840‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:19072866‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:20873111‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:20690150‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:19538903‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgcc     <  1:20290692‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        >  1:29452456‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        >  1:10373883‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        >  1:903268‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        >  1:22091987‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggat        >  1:28261920‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgtgcggcagccacacggcagacagacggatgc      >  1:28769907‑M2/1‑4 (MQ=255)                                             ggcgcggcaggtaaattctccgggtattccgggtcgagcgtcagccacacgtcagacacacggatgcc     <  1:6531806‑M2/68‑65 (MQ=255)                                             ggcgcggcaggtaaattctccggggattccgggtcgtgcgtcagccacacggcagacagacggatgcc     >  1:18704178‑M2/1‑4 (MQ=255)                                              gcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccg    <  1:746143‑M2/68‑66 (MQ=255)                                              gcgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccg    <  1:968717‑M2/68‑66 (MQ=255)                                               cgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgt   <  1:28106191‑M2/68‑67 (MQ=255)                                               cgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgt   <  1:3127730‑M2/68‑67 (MQ=255)                                               cgcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgt   <  1:21329740‑M2/68‑67 (MQ=255)                                                gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgtt  >  1:16133887‑M2/1‑1 (MQ=255)                                                gcggcaggtaaattctccgggtattccgggtcgtgcgtcagccacacggcagacagacggatgccgt   >  1:18874594‑M2/1‑1 (MQ=255)                                                |                                                                    ATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCG  >  CP009273/3613465‑3613579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.