| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3641246 | 469 (1.300) | 23 (0.120) | 11/62 | NT | 9.2% | intergenic (‑98/‑177) | dinQ/agrA | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/Inactive antisense sRNA |
| ? | CP009273 | 3641677 = | 193 (0.970) | noncoding (24/84 nt) | agrB | Antisense sRNA antitoxin for the DinQ toxin | |||||
Only 100 of 458 total aligned reads displayed.
GCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGA > CP009273/3641610‑3641744 | tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTccag < 1:2646035/67‑1 (MQ=255) tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTccag < 1:17919163/67‑1 (MQ=255) tAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTccag < 1:8687560/67‑1 (MQ=255) ttGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGc < 1:2824822/68‑1 (MQ=255) gCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGcc > 1:24210802/1‑67 (MQ=255) aaTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCagag > 1:29105891/1‑63 (MQ=255) aaTGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGccacc > 1:3304375/1‑68 (MQ=255) ccactgcctgtcacggcgcatgtctcattgttagataagaactctctcactccCGCCAgagccacaca > 1:16729102‑M2/54‑65 (MQ=255) ctctgcctgtcacgtctcatgtctctttgttagataagaactctctcactccAGCCAGAGCCACCAAc < 1:29195029‑M2/16‑1 (MQ=255) cactgcctgtcacgtcgaatgtctcattgttagataagaactctctcactccAGCCAGAGCCACCAAc < 1:6638083‑M2/16‑1 (MQ=255) actgcctgtcacggcgcatgtctcattgttagataagaactctctcactccAGCCAGAGCCACCCACt > 1:21249396‑M2/52‑68 (MQ=255) aGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCa > 1:10291887/1‑68 (MQ=255) cctgtcacggcgcatgtctcattgttagataagaactctctcactccCGCCAGAGCCACCAACTAAgg > 1:7087502‑M2/48‑68 (MQ=255) cctgtcacggcgcatgtctcattgttagataagaactctctcactccAGCCAGAGCCTCAAAATCAgg > 1:6870781‑M2/48‑68 (MQ=255) ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:10068417/1‑68 (MQ=255) ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:7527628/1‑68 (MQ=255) ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:452272/1‑68 (MQ=255) ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:5378035/1‑68 (MQ=255) ccACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:6158540/1‑68 (MQ=255) atttGGCTAATAGAATTGATGGGTTAGATTAGAAATCTCTCACTCCAGCCAGAGCCACCAACTCAgg < 1:18548025/64‑1 (MQ=18) tgtcacttcgcatgtatcattgttagataagaactctctcactccAGCCAGAGCCACCAACTCAGGGc < 1:26764015‑M2/23‑1 (MQ=255) aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCACCTCAgg > 1:19520218/1‑66 (MQ=255) aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:10665577/1‑66 (MQ=255) aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:2740158/1‑66 (MQ=255) aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:14178283/1‑66 (MQ=255) aCTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAgg > 1:8072030/1‑66 (MQ=255) acggcgcatgtctcattgttagataagaactctctcactccGGCCAGAGCCACAAAATCAgggcctg > 1:12209202‑M2/42‑64 (MQ=255) acggcgcatgtctcattgttagataagaactctctcactccGGCCAGAGCAACCAACTCAggg > 1:15796402‑M2/42‑63 (MQ=255) acggcgcatgtctcattgttagataagaactctctcactccAGCCAGAGCCACAAAATCAGGGCTGGa > 1:7378253‑M2/42‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCTCCAACTCTGGGCTGGAAAGTaa > 1:12016031/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:23195753/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:22475702/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:2593578/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:8894989/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:23582743/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:25056588/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:24592580/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:2081469/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:9076285/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:2868366/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:20129664/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:19749847/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:19340185/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:29365719/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:309364/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:14461322/1‑68 (MQ=255) aGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaa > 1:16261783/1‑68 (MQ=255) gTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaa > 1:11100617/1‑68 (MQ=255) tATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa > 1:15021762/1‑68 (MQ=255) aTTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaa > 1:11682661/1‑68 (MQ=255) ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaa > 1:9294232/1‑67 (MQ=255) ttGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaa > 1:15557929/1‑67 (MQ=255) tctcattgttagataagaactctctcactccGGCCAGAGCCACAAAATCCGGGCGGGCAAGTaaaaa > 1:22374129‑M2/32‑67 (MQ=255) tGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaaa > 1:25438207/1‑67 (MQ=255) tGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaaa > 1:23463420/1‑67 (MQ=255) tGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaaa > 1:13456297/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCCCCCACTCAGGGCTGGAAAGTAAAAAACCg > 1:20631965/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:4012282/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:12361906/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:3404979/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:3149804/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:1753027/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:18970771/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:16476117/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:27666598/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:21085876/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:21855917/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:22283431/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:22932833/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:13148887/1‑67 (MQ=255) gCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCg > 1:12903315/1‑67 (MQ=255) gttagataagaactctctcactccGGCCAGAGCCACCAAATAAGGGCAGGAAAGTAAATAACCGAAGc > 1:26234451‑M2/25‑68 (MQ=255) aTAAGAACTCTCTCACTCCGGCCAGAGCCACCAAATCAGGGCACAAAAGTAAAAAAGCGAAGGAAAg > 1:21585524/1‑67 (MQ=17) aagcactctctcactccAGCCAGAGCCACAAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:16900208‑M2/18‑68 (MQ=255) aagaactgtctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAGAGTCg > 1:20364920‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCCCCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:13919370‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:10507038‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:4606053‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:13731649‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:29673889‑M2/18‑68 (MQ=255) aagaactctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg > 1:27964688‑M2/18‑68 (MQ=255) actctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAGAGTAAAAAACCGACGCAAAGTCGGttt > 1:9210534‑M2/14‑68 (MQ=255) actctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCggtgt > 1:15322239‑M2/14‑66 (MQ=255) actctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:17106818‑M2/14‑68 (MQ=255) actctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttt > 1:28336311‑M2/14‑68 (MQ=255) actctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGt < 1:6462910‑M2/53‑1 (MQ=255) ctctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttt > 1:19905349‑M2/13‑68 (MQ=255) tctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttt > 1:3713107‑M2/12‑68 (MQ=255) ctctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGtttttt < 1:23967531‑M2/58‑1 (MQ=255) ctcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGttttttt > 1:18291304‑M2/9‑67 (MQ=255) tcactccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAc > 1:7926362‑M2/8‑68 (MQ=255) ctccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc < 1:23811149‑M2/64‑1 (MQ=255) ctccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc < 1:761769‑M2/64‑1 (MQ=255) ctccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTc < 1:12474797‑M2/64‑1 (MQ=255) tccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:9606194‑M2/4‑66 (MQ=255) tccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:13009154‑M2/4‑66 (MQ=255) tccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:5631707‑M2/4‑66 (MQ=255) tccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:4887284‑M2/4‑66 (MQ=255) tccAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGt > 1:24854167‑M2/4‑66 (MQ=255) cAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTg > 1:16002689‑M2/2‑68 (MQ=255) | GCTAATTCTTGCAATGTTAGCCACTGGCTAATAGTATTGAGCTGTTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGGTTTTTTTACGTCCTGA > CP009273/3641610‑3641744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |