| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4512275 = | 297 (0.830) | 16 (0.050) | 6/92 | NT | 5.5% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 303 (1.020) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
Only 100 of 502 total aligned reads displayed.
CCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTTC > CP009273/4512252‑4512384 | ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt < 1:21558023/67‑1 (MQ=255) ggtaagcatgtttcgttaatcaCCGATGCCCGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:3379598‑M1/46‑1 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTg < 1:7233992/67‑1 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:936561/68‑1 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:20386501/68‑1 (MQ=255) cAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGa < 1:13336948/68‑1 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGAtt < 1:12305776/66‑1 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa > 1:14838872/1‑67 (MQ=255) gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTa < 1:8366232/67‑1 (MQ=255) ttCTGGCCCCACATGGACGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg < 1:4478011/68‑1 (MQ=255) catgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg < 1:29380952‑M1/52‑1 (MQ=255) catgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg < 1:28499533‑M1/52‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa > 1:25714452/1‑68 (MQ=255) gCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGGGATTAACGAAACa > 1:10352007/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:27441316/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:25222141/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:6079224/1‑68 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:26790470/1‑67 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:13564990/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:10034756/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:17688366/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:1693109/68‑1 (MQ=255) ccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:19657758/1‑66 (MQ=255) caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:26234501/1‑67 (MQ=255) caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:12962922/1‑67 (MQ=255) aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa > 1:19836774/1‑67 (MQ=255) tcaccgatgcacgtttctcgggcgtttctactggcgcgtgcatcggTGATTAACGAAACATGCTTAcc < 1:6559312‑M2/22‑1 (MQ=255) tcaccgatgcacgtttctcgggcgtttctactggcgcgtgcatcggTGATTAACGAAACATGCTTAcc < 1:11444465‑M2/22‑1 (MQ=255) tGGCCGATTCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:18766135/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:28959226/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:4271669/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:26361751/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc > 1:18952224/1‑68 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:24713601/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:1644349/68‑1 (MQ=255) ggCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCg < 1:11316490/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:29520505‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:7610294‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:25631944‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:23935843‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:20806459‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAGGCTTACCGTa < 1:12839137‑M1/68‑1 (MQ=255) CGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTAt > 1:18529452‑M1/1‑68 (MQ=255) CGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTAt > 1:3147575‑M1/1‑68 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGa > 1:3548715‑M1/1‑67 (MQ=255) CACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAg < 1:22803945‑M1/68‑1 (MQ=255) cgcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAgct > 1:19271329/1‑64 (MQ=255) gcCAGTAGAAACGCCCGAGAATCGTGCATCGTTGAGTAAAGAAACATGCTTAACGTATTACAGATGCt < 1:15472226/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:27133646/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:8272004/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:25938407/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:8108416/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:22124188/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:5021800/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:29253410/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:16581638/68‑1 (MQ=255) cAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTc < 1:8842347/68‑1 (MQ=255) cAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTc < 1:12731930/68‑1 (MQ=255) cAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTc < 1:1683044/68‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:14504202/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:26639098/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:10749949/67‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:26018498/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:3985195/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:2109307/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:579753/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:18316246/67‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:18141461/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:17234398/67‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:16696441/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:1609224/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:4817173/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:23646665/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:22651794/1‑67 (MQ=255) aaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:24823893/1‑66 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:15976566/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:7421751/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:15152499/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:19518945/68‑1 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:21276690/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:12016074/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:7890124/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg < 1:24361852/68‑1 (MQ=255) gCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTgg > 1:14125528/1‑68 (MQ=255) cGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTaa < 1:11135617/68‑1 (MQ=255) gagaAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAAc < 1:179499/68‑1 (MQ=255) gaAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAAcc < 1:2248523/67‑1 (MQ=255) aaaCGTGCATCGGTGATTAACGAAACATGCTAACCGTATGACAGATGCTTCAGGGCACTGGTAACCTg > 1:21845657/1‑68 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCt < 1:29798588/66‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:28268802‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:2015565‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGAAACCTGGTAgg < 1:20928692‑M2/60‑1 (MQ=255) atcggTGATTAACGAAACATGCTTCCCGTATGACCGATGCTTCAGGGCACTGGTAACCTGGTAGGttt < 1:27620104‑M2/63‑1 (MQ=255) atcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGtt > 1:25358409‑M2/6‑67 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:9569656‑M2/65‑1 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:8586820‑M2/65‑1 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:1383637‑M2/65‑1 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:555268‑M2/65‑1 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttctt < 1:6362285‑M2/66‑1 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:6846491‑M2/3‑67 (MQ=255) | CCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTTC > CP009273/4512252‑4512384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |