| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 7 (0.020) | 3/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 245 total aligned reads displayed.
CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:35387173/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:23857974/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:18555284/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:33008028/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:33612414/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:12649673/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:24878465/1‑67 AGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:8749259/1‑67 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:33473736/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:32513688/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:19874167/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:34768024/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:11466/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:29015718/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:22960729/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:22653040/65‑1 TGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAT < 1:38032798/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:24460466/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:17840188/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:16065202/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:2323733/68‑1 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:23413172/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:13327809/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:12875448/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:27486196/1‑67 AAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGATACAAAGTAAAAAGCCTTATCCGAC < 1:8500888/68‑1 AAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGAC < 1:24904759/68‑1 AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:4882901/1‑65 ACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACag > 1:14521349/1‑66 CTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAG > 1:960963/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24563473/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:27884725/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:30020866/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:31067094/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:26733218/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:31790788/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:32026503/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:1218826/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13160214/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:758859/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:35508857/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13949452/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24304237/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24013846/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:7557596/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:15265169/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:7152439/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:662831/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:17300327/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:19370975/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:36443923/1‑68 GCCCTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13533580/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:2693202/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:29870636/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:30769851/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:36289863/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:38752276/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:10313905/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:27127919/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTGTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:8279393/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTGTTTACTTTGTCTCAGGCAGGTGAGCGACGAGCCTGAA > 1:8635938/1‑68 CTTATCCGACTTGTCAGTCGTATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:33868635/66‑1 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:28362451/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:6392087/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:34199389/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:29494034/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:7499547/66‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:17239672/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:30306555/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:26397771/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:20098701/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:21190303/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:1006794/68‑1 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGT > 1:22864578/1‑68 ATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGT > 1:19666808/1‑68 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:16462970/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:5956711/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:1748706/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:14869472/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:16821776/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:10495972/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:25552637/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:26130964/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:20584969/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:37819012/1‑68 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:36109633/68‑1 CGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGT < 1:34342141/68‑1 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:34513885/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:24731731/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:9494077/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:22567236/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:3060630/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:13717216/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:16301145/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:21640704/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:5675541/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:36760011/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:4017851/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:36974398/1‑68 TTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT > 1:11224567/1‑68 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |