| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 7 (0.020) | 3/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 1056 total aligned reads displayed.
ACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729615‑3729748 | aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:28556331/1‑68 (MQ=255)aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTg > 1:34575383/1‑68 (MQ=255)aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT > 1:8326108‑M1/1‑67 (MQ=255)aCGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGAAAAAGTAAAAAGCCTTATCCGACTg > 1:29910955/1‑68 (MQ=255) accaaccaCGCTTCAGGCTAGTACCTCAACTGCCTGAGACAAAGTAAAAAGGCTAATCCGACTGACAa > 1:7638234‑M2/1‑67 (MQ=255) aCCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAa > 1:11224567‑M2/1‑67 (MQ=255) ccAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAag > 1:14679469‑M2/1‑66 (MQ=255) caacaaCGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagt > 1:6583206‑M2/1‑65 (MQ=255) caacGCTTCCGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgg > 1:38722403‑M2/1‑62 (MQ=255) aacGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcgga < 1:16462970‑M2/68‑8 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:21190303‑M2/68‑10 (MQ=255) cGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggata < 1:27719687‑M2/68‑10 (MQ=255) gCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataa < 1:21923213‑M2/68‑11 (MQ=255) gCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataa < 1:25708546‑M2/68‑11 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:30769851‑M2/1‑56 (MQ=255) ttCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataagg > 1:36289863‑M2/1‑56 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggttaaggc > 1:10277666‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggatagggc > 1:13533580‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:31790788‑M2/1‑55 (MQ=255) tCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggc > 1:36443923‑M2/1‑55 (MQ=255) aGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTc > 1:4904484/1‑68 (MQ=255) ggCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATATGGCTCa > 1:26754090/1‑68 (MQ=255) tCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAg < 1:37815923/67‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt < 1:1580092/68‑1 (MQ=255) aGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAAt > 1:17207333/1‑68 (MQ=255) cTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc > 1:2422972/1‑68 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGc < 1:9008869/67‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa > 1:1847790/1‑68 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:19374121/68‑1 (MQ=255) tCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCa < 1:4287609/68‑1 (MQ=255) aaCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAt > 1:33724432/1‑68 (MQ=255) aaCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAt > 1:26190731/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:23997291/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAAtt > 1:10752858/1‑68 (MQ=255) aCTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTC‑AGGAAATGCAAtt > 1:7261542/1‑67 (MQ=255) tGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTAc < 1:13313436/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:15483818/68‑1 (MQ=255) gCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACa < 1:120205/68‑1 (MQ=255) cTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACata > 1:34039101/1‑68 (MQ=255) tGAGACAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggctttttactttgtctcaggcagt > 1:35875646‑M2/1‑33 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:10015338/1‑67 (MQ=255) aCAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATgcg > 1:9509008/1‑67 (MQ=255) cAAAGTAAAAAGCCTTATCCGACTGACAagtcggataaggctttttactttgtctcaggcagttgag > 1:20624671‑M2/1‑28 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:25011208/68‑1 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:32258745/68‑1 (MQ=255) aaGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGcgccgc < 1:22258478/68‑1 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa < 1:34839890/66‑1 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa < 1:28238944/66‑1 (MQ=255) aaaaaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGa < 1:22896101/66‑1 (MQ=255) aaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTaa > 1:14214237/1‑67 (MQ=255) aaGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAc < 1:11547455/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:19091727/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:24449782/68‑1 (MQ=255) aGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAAcc < 1:3021078/68‑1 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggctgttgagctacgagcctga > 1:22786250‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:27422385‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:12457053‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:7557596‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctga > 1:2325596‑M1/1‑13 (MQ=255) gCCTTATCCGACTtgtcagtcggataaggctttttactttgtcccaggcagttgagctacgagcctga > 1:18013504‑M1/1‑13 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:38209820/1‑68 (MQ=255) gCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCg > 1:20451912/1‑68 (MQ=255) ccTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:29412603‑M1/1‑12 (MQ=255) ccTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:25490117‑M1/1‑12 (MQ=255) ccTTATCCGACTtgtcagtcggataaggctgtttactttgtctcaggcaggtgagcgacgagcctgaa > 1:8635938‑M1/1‑12 (MQ=255) cTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:23470201‑M1/1‑11 (MQ=255) cTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:6392087‑M1/1‑11 (MQ=255) cTTATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaa > 1:13005337‑M1/1‑11 (MQ=255) ttATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTg < 1:16226009/68‑1 (MQ=255) ttATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTg < 1:30546284/68‑1 (MQ=255) tATCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcg < 1:20098701‑M1/68‑60 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:31365674/68‑1 (MQ=255) tATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTgg < 1:31094055/68‑1 (MQ=255) aTCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgt > 1:19666808‑M1/1‑8 (MQ=255) tCCGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgtt < 1:24660457‑M1/68‑62 (MQ=255) ccGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttg > 1:1748706‑M1/1‑6 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:2954842/1‑68 (MQ=255) ccGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTa > 1:33324951/1‑68 (MQ=255) cGACTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgt < 1:34342141‑M1/68‑64 (MQ=255) cGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt < 1:7967567/68‑1 (MQ=255) cGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt < 1:5868118/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt > 1:39085436/1‑67 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:37541582/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:5442428/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:695946/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:13861084/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:10526665/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:4535547/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:16836633/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:35634894/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:35211844/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:33500899/68‑1 (MQ=255) gACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATc < 1:32615930/68‑1 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:36974398‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:36760011‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:2707290‑M1/1‑3 (MQ=255) aCTtgtcagtcggataaggctttttactttgtctcaggcagttgagctacgagcctgaagcgttgttg > 1:21640704‑M1/1‑3 (MQ=255) aCTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTAt > 1:26539126/1‑66 (MQ=255) cTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCt < 1:14464522/68‑1 (MQ=255) tGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTg > 1:15062273/1‑68 (MQ=255) | ACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATAAGGCTCAAGGAAATGCAATTACATATGCGCCGCGATTAACCGTTGGTTATCCTG > CP009273/3729615‑3729748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |