| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 478 (1.010) | 25 (0.060) | 7/100 | NT | 5.6% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 424 (1.010) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 134 total aligned reads displayed.
GTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921451‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 GTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCG > 1:18038747/1‑67 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:16625011/1‑68 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:39110433/1‑68 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:23555864/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:32045575/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:32032524/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:2758471/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:5660359/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:5614049/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGAGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:38239306/67‑1 TCAGTGTGGAGTATGGCCAGCTCCTGTTCGCGAGAGCGTCCCGTCTCTGCTGTAATAATTTATCGCC > 1:26474689/1‑67 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:25607153/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:14538548/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:37199178/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:32913134/68‑1 TGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGACCCTTCTCTGCTGTAATAATTTATCGCCGCCc > 1:4274824/1‑66 GTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCGGTAATAATTTATCGCCGCC < 1:18411975/65‑1 TGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGC > 1:37856641/1‑45 CCTTCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATTAATTATTACAGCAGAG > 1:15038504/1‑68 CCTTCTCTGCTGTAATAATTTATAGCCGCCGGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAG > 1:35333017/1‑68 TCTCTGCTGTAATAATTTATCGCCGCCTGCTGAGACGCGGGCGGCGATATATTAGTACAGCAGGGAAG > 1:31025533/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTTTTACAGCAGAGAAGGG > 1:14713766/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:3826587/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:17781247/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:17299805/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:15420026/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:22751292/1‑68 CTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGAGAAATTTTTACCGCAGAGATGGG > 1:20615986/1‑67 TGCTGTAATAATTTATCGCCGCCTGCTCAGACGCGGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:32112065/1‑68 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTTCAGCAGAGAAGGGAC > 1:24954737/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACGGCAGAGAAGGGCCG > 1:23271904/1‑68 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGCAGGGAC > 1:26264815/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:20079730/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:13652287/1‑67 TGTATTAATTTATCGCCGCCTGCTGAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGC > 1:34297128/1‑67 TGTAATAATTTATCGCCGCCTGCTCAGGCGCTGGCGGCGATTAATTATTTCAGCTGAGAAGGGACGC > 1:16301022/1‑67 TGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGC > 1:10803868/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:34027634/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:35114245/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:36550316/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:2805/1‑67 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:38432173/67‑1 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:25530541/67‑1 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:7747374/67‑1 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAG < 1:6008956/66‑1 CGCCTGCTCACACGCTGGCGGCGATAAATTATTACACCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:25275371/67‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:9558503/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:15774492/1‑68 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:1580364/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:38825267/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:11872555/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:11838037/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:11354627/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:30514360/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:6656717/1‑68 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:2246333/1‑68 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:283051/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:25073905/68‑1 CCTGCTCAGACGCTGGCGGCGATACATGATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:32535509/1‑67 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG > 1:15182754/1‑68 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:36777591/1‑67 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:2275970/1‑67 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:8776536/1‑67 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:17777304/1‑67 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:13406729/1‑67 CTGCTCAGCCGCGGGCGGCGATAAATTATTACAGCAGAGAAGCGACGCTCTCGCGAACAGCAGCTGGC < 1:27422681/68‑1 CTGCTCAGACGCTGGCTGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:8652973/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTTCAGCAGAGACGGGACGCTCTCGCGAACAGCAGCTGGC < 1:28747465/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:9667501/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:14964324/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:1436167/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:3785759/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:12389758/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:7585420/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:11939484/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:8607498/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:7475459/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:31038359/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:21404238/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:27080059/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:21347846/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:10503624/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:28115201/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:28681281/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:29725784/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:30143996/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:20880417/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:35847097/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:31210603/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:20769585/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:20070904/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:32988389/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:35508948/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG > 1:5489975/1‑67 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:30263737/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:707011/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:1828263/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:17673913/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:3461789/67‑1 CTGCGCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:20392805/68‑1 GTTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921451‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |