| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 478 (1.010) | 25 (0.060) | 7/100 | NT | 5.6% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 424 (1.010) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 804 total aligned reads displayed.
TGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921457‑3921589 | tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:25210706/1‑67 (MQ=255)tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:36592768/1‑67 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:31283066/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:13836932/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:4301373/1‑68 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGATAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:36369633/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:32958739/1‑67 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:21660069/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:6723057/1‑67 (MQ=255) gAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:19607935/1‑66 (MQ=255) aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:15829744/1‑65 (MQ=255) aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:2644412/1‑65 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:24523154/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:1893915/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:6365967/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:2200800/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:12734557/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:10029996/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:26177895/1‑68 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCCGCGTCTGa > 1:33277420/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:11481798/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:10847856/1‑67 (MQ=255) ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:14735399/1‑68 (MQ=255) ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:26567222/1‑68 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCGCTTCTCTGCTGTAATAATTTATCGCCGCCCGCGGCTGAGCAg < 1:27422681‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:21404238‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:20769585‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:31038359‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:30143996‑M2/68‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:27169062‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:283051‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:16121640‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:11872555‑M2/68‑4 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAgg > 1:8477074‑M2/1‑65 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:2805‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:34027634‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:12130690/1‑68 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:3801425/1‑67 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:32156566/1‑67 (MQ=255) ttCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCa > 1:10446191/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:24969399/1‑68 (MQ=255) agagCGTCCCTTCTCCGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:25541828/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:7958605/1‑68 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:18064061/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:11713635/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:34306556/66‑1 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:3826587‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:22751292‑M2/1‑43 (MQ=255) ccTTCTCTGCTGTAATAATTTATAGCCGCCggctcagacgctggcggcgataaattattacagcagag > 1:35333017‑M1/1‑30 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:35571465/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:27028391/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:23915496/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:36949879/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:29120084/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:33808896/68‑1 (MQ=255) tctcTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcgc < 1:36083529/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:32468574/68‑1 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:34704780/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:38501272/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:9786510/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:30852598/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:15665071/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:23290519/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:22539205/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:2103939/1‑68 (MQ=255) tgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGa > 1:16334153/1‑68 (MQ=255) tgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGa < 1:20556356/68‑1 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:3897170/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:29804870/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:37502175/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:9142032/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:7750175/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:20225110/67‑1 (MQ=255) ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAACGCGCCAGATatcatc < 1:29517762/68‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:5975666/1‑68 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaa < 1:14244066/68‑1 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:32659023/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:14481825/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:31673392/1‑68 (MQ=255) tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc < 1:17052342/68‑1 (MQ=255) cgccgcCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc > 1:12342931/1‑67 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagca > 1:35114245‑M1/1‑6 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagca > 1:17605439‑M1/1‑6 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc < 1:5205333/68‑1 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:30514360‑M1/68‑66 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:4767397‑M1/68‑66 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:20041216‑M1/68‑66 (MQ=255) gcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg < 1:27868703‑M1/68‑66 (MQ=255) cctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctgg > 1:15182754‑M1/1‑2 (MQ=255) cctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg > 1:17777304‑M1/1‑2 (MQ=255) cctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctg > 1:8776536‑M1/1‑2 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:14964324‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:1540364‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:3785759‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:7475459‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:28681281‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctgg > 1:5489975‑M1/1‑1 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctgg < 1:707011‑M1/67‑67 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:13518419/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:13326658/68‑1 (MQ=255) | TGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921457‑3921589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |