BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4190073 =	486 (1.030)	81 (0.210)	22/90	NT	17.9%	intergenic (+51/‑136)	yjaG/hupA	DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
*	?	CP009273	4190110 =	355 (0.940)	81 (0.210)	22/90	NT	17.9%	intergenic (+88/‑99)	yjaG/hupA	DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit

Only 100 of 237 total aligned reads displayed.

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4190148‑4190073

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  >  CP009273/4190110‑4190175

ATAGCACTCTCCTGCATACACGCCCCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGCCGGG                                                                            >  1:32492287/1‑68

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG                                                                            <  1:34621077/68‑1

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG                                                                            >  1:22321655/1‑68

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG                                                                            >  1:23309607/1‑68

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG                                                                            >  1:5295806/1‑68

ATAGAACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCACCCAAATGTAGACCAGACGGG                                                                            >  1:35473533/1‑68

  AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG                                                                          <  1:12100554/68‑1

  AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG                                                                          >  1:21051396/1‑68

  AGCACTCTCCTGCAAACACCCACCGATAGCCACTTTTTTTCGGCCCCCAAATGTACCCCACACGGGGG                                                                          <  1:31300141/68‑1

     atTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGCCGGGGGGCG                                                                       >  1:11650379/3‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:19681177/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:31467175/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:9220601/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:26662656/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:7606291/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:26024733/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:11409106/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                       >  1:38280206/1‑68

     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGG                                                                         <  1:10387157/66‑1

      CTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGA                                                                      <  1:37980988/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:26469988/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:22959281/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:27217366/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:24773420/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:27756799/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     >  1:16835810/1‑68

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:24037172/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                     <  1:29479683/68‑1

       TCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAAGGTAGACCAGACGGGGGGCGAA                                                                     >  1:25679885/1‑68

               aaACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCCGACGGGGGGTGAAAAAAAGT                                                              <  1:11848551/65‑1

                TACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGG                                                            <  1:20498495/68‑1

                  CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT                                                          <  1:36411459/68‑1

                  CACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCT                                                          <  1:37591985/68‑1

                    CGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTAT                                                        <  1:19246459/68‑1

                       ACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGG                                                     <  1:30390951/68‑1

                       ACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCG                                                      <  1:496529/67‑1

                        CCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGT                                                    <  1:33274444/68‑1

                        CCGATAGCCACTTTTTTTCGCCCCCCAAATGTACACCAGCCGGGGGGCGAAAAAAAGTGGCTAGCGGT                                                    <  1:13196242/68‑1

                        CCGAAAGCCACTTTTTTCCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGT                                                    <  1:33863993/68‑1

                            TAGCCACTTTTTTTCGCCCCCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG                                                 <  1:33535566/67‑1

                            TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGT                                                <  1:22390092/68‑1

                            TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG                                                 <  1:23048994/67‑1

                            TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG                                                 <  1:17156466/67‑1

                            TAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG                                                 <  1:34909943/67‑1

                                CACTTTTTTTCGCCCCCCAAATGTCGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:32757225/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:14143198/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:19179441/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:19819242/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:9148279/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:6795517/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:38416209/68‑1

                                CACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGT                                              <  1:29085048/66‑1

                                CACTTTTTTTCGCCCCCCAAATGCAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:31982551/68‑1

                                CACTTTATTTCCCCCCCCAAATGTAGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAT                                            <  1:12522838/68‑1

                                  CTTTATTTCGCCCCCCAAATGTAGACCCGACGGGGGGCGAAAAAAAGTGGCTATCTGTGCGTGTATGC                                          <  1:20781505/68‑1

                                   TTTTTTTCGCCCCCCAAATGTCGCCCCCCCGGGGGGCGAAAAAAAGAGGCTATCGGTGCGTGTATGCA                                         <  1:9516684/68‑1

                                   TTTTTTTCGCCCCCCAAATGTAGCCCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCA                                         <  1:9614378/68‑1

                                     TTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGG                                       <  1:4409332/68‑1

                                        TTCGCCCCCCAAATGTAGACCCGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGA                                    <  1:21007345/68‑1

                                          CGCCCCCCAAATGTACACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGT                                  <  1:11030104/68‑1

                                           GCCCCCCAAATGTACACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTG                                 <  1:17859452/68‑1

                                               CCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAT                             <  1:36575783/68‑1

                                               CCCAAATGACGACCAGCCGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAT                             <  1:12418533/68‑1

                                                      GTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCA                      >  1:6132599/1‑68

                                                                 GGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCA           <  1:8269940/68‑1

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:13615157/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:14568177/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:2063979/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:24605660/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:2745168/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:28625015/1‑66

                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGC            >  1:31064455/1‑66

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          >  1:38828349/1‑67

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          >  1:12676234/1‑67

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          <  1:12786466/67‑1

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          >  1:4393675/1‑67

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          <  1:15409351/67‑1

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          <  1:36107921/67‑1

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          <  1:21367651/67‑1

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          >  1:24964553/1‑67

                                                                   GGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC          <  1:30898945/67‑1

                                                                    GGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACT         <  1:8848895/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:5510293/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:5902790/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:28226454/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:4233547/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:37075682/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:36676352/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:35695971/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:27103920/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:26197576/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:24338166/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:186134/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:10700611/67‑1

                                                                        GAAAAAAAGTGGCTATCGGTGCGGGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT     <  1:34837366/67‑1

                                                                          AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  <  1:38648437/68‑1

                                                                          AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  <  1:30144162/68‑1

                                                                          AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  <  1:28802208/68‑1

                                                                          AAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGC   <  1:13881917/67‑1

                                                                          AAAAAAGTGGCTATCGGTGCGTGTATGC‑GGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  <  1:29946175/67‑1

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4190148‑4190073

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCT  >  CP009273/4190110‑4190175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.