| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4190073 = | 486 (1.030) | 81 (0.210) | 22/90 | NT | 17.9% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | CP009273 | 4190110 = | 355 (0.940) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
Only 100 of 705 total aligned reads displayed.
ATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGA > CP009273/4190005‑4190139 | taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCt < 1:21442876/68‑1 (MQ=255) taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCt < 1:6078919/68‑1 (MQ=255) agcatcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccactttttt < 1:38648437‑M1/2‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:29025163‑M1/4‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTc < 1:27103920‑M1/4‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:24964553‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc < 1:30898945‑M1/9‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:2109507‑M1/59‑67 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccc > 1:26736266‑M1/59‑67 (MQ=255) tgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccccc < 1:8269940‑M1/11‑1 (MQ=255) tgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGcccccc < 1:8615780‑M1/11‑1 (MQ=255) gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcccccc > 1:6273502/1‑68 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:13615157‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:2063979‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:29760944‑M1/57‑66 (MQ=255) gcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:24605660‑M1/57‑66 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCg < 1:3343452/67‑1 (MQ=255) aaTAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCg < 1:17745212/67‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:27340823/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:193473/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 1:15032419/68‑1 (MQ=255) acaaGAAAACGTGATTTAACGCCTGATTAGTCGTACCTCGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:23508290/4‑66 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:12933578/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:3375006/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 1:12108619/66‑1 (MQ=255) ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCt > 1:35674455/1‑68 (MQ=255) aaaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAt > 1:7314221/1‑68 (MQ=255) caaCGTGATTTAACGCCTGATTTGTCGTACCGTGATTCTTCCCGTTCGCCCCCCGTCTGGGCTACAt < 1:37880109/66‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACa < 1:26174822/66‑1 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:21964342/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:28233493/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:5743046/1‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 1:20808876/1‑68 (MQ=255) aCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACTTTTg > 1:34119790/1‑68 (MQ=255) atagcactctcctgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTggg > 1:36196407‑M1/40‑68 (MQ=255) atagcactctcctgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTggg < 1:36575783‑M1/29‑1 (MQ=255) aTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTgg > 1:1614182/1‑64 (MQ=255) ttAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCg > 1:36946843/1‑68 (MQ=255) ttAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCg > 1:10077414/1‑68 (MQ=255) ttAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCg > 1:31195900/1‑68 (MQ=255) tAACGCCTGTTTTGTCGTACCTGGAGTCTTCCCTTTCGCGCCCCGTCTGGTCTACATTTGGGGGGCGa < 1:10394796/68‑1 (MQ=255) aaCGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaa < 1:9336890/68‑1 (MQ=255) tgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGaaaaaaa < 1:9614378‑M1/41‑1 (MQ=255) cTGATTTGTCGTCCCTGGAGTCTGCCCTTACGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaaa < 1:12550457/68‑1 (MQ=255) gcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAg < 1:32092938‑M1/42‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTGTACATTTGGGGGGCGAAATAAAGTg < 1:6685013‑M1/44‑1 (MQ=255) atacacgcaccgatagccacttttTTTCGCCCCCCGGCTGGTCTACATTTGGGGGGCGAAAAAAAGTg < 1:19179441‑M1/44‑1 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt > 1:10617356/1‑68 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt > 1:35260841/1‑68 (MQ=255) tGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCt < 1:37337902/68‑1 (MQ=255) acgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:22390092‑M1/48‑1 (MQ=255) acgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:34806733‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:10961774‑M1/48‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTa < 1:23048994‑M1/48‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt < 1:32830884/67‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:14575283/1‑68 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:14016252/1‑68 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:4026379/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:4857768/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:27867057/68‑1 (MQ=255) aCCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt < 1:32722694/68‑1 (MQ=255) ccTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg < 1:7958074/68‑1 (MQ=255) tGGTGTCTTCCCTTTCGCCCCCCGTCTGGTCTAGA‑TTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:11156025/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:14413781/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:25748868/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:17959973/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:34547992/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:32432065/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:18258868/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:27594774/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:19903673/68‑1 (MQ=255) tGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:29345577/68‑1 (MQ=255) tGGAGGCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCg < 1:5190005/68‑1 (MQ=255) ggAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt < 1:17216989/68‑1 (MQ=255) agccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtg < 1:37591985‑M1/58‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:3387959/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:11621088/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:19689566/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:4328005/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 1:38238472/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgggt > 1:4664533/1‑68 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAATAAAGTGGCTATCGGTGCgtgt < 1:24231207/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:17526956/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:18789853/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:13439219/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:15640749/67‑1 (MQ=255) gTCTTCCCTTTCGCCCCCCGTCTGGGCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt < 1:30212789/67‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:26567280/1‑68 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAGAGTGGCTATCGGTGCGTGTAt < 1:9098504/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:16431781/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:28728414/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:15372461/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:6943865/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:30453822/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:31553564/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:26396155/67‑1 (MQ=255) cTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:30094949/67‑1 (MQ=255) cTTCCC‑TTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:13191851/66‑1 (MQ=255) tCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa > 1:1697367/1‑68 (MQ=255) cTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga > 1:2043929/1‑68 (MQ=255) | ATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGA > CP009273/4190005‑4190139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |