BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4538708	475 (1.010)	23 (0.060)	8/94	NT	5.8%	coding (84/903 nt)	fimH	minor component of type 1 fimbriae
*	?	CP009273	= 4538723	355 (0.900)	23 (0.060)	8/94	NT	5.8%	coding (99/903 nt)	fimH	minor component of type 1 fimbriae

Only 100 of 215 total aligned reads displayed.

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:17026974/1‑67

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:5323224/1‑67

 TTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:25581239/1‑68

  TATTACCCTGTTTGCTGTACTGCTGCTGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAAC                                                                            <  1:1049054/66‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG                                                                          <  1:36052854/68‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG                                                                          <  1:20614951/68‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG                                                                          <  1:8642849/68‑1

  TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC                                                                           >  1:15683811/1‑67

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:1394956/68‑1

   ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC                                                                         <  1:28368744/68‑1

     ttgCCTGTTTGCTGTAGTTTTGATGGGGTGGTCGGTAAATGCCTTGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:37966383/65‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:31136772/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:31286287/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:10467097/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:29204625/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       <  1:14412931/68‑1

     TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA                                                                       >  1:17789178/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:2724082/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:381378/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:38758821/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:31882231/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:15249882/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:33971109/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:12623465/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:33680520/1‑68

      ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA                                                                      >  1:853437/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:2884257/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:6878901/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:37626315/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT                                                                     >  1:23563392/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACAGCCAAT                                                                     >  1:16744946/1‑68

       CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA                                                                             >  1:28290800/1‑60

                                             GCCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAAT                                >  1:16427757/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGTTAGCGGTCCCATTGGGGGGTTTTCTGGCGAATG                               >  1:14895190/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGTTAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:32550689/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACGGGCGAATG                               >  1:38291425/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:24263954/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:33388400/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG                               >  1:25279687/1‑67

                                              CCTGGTCATTCGCCTGTAAAACCGCCAATACGGATTGCGGTACCAGTGGCGGGTTTACAGGCGAATG                               >  1:20053979/1‑67

                                                  GTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAG                          >  1:26750702/1‑68

                                                   TCATTCGCCTGTAAAACCGCCAATTGGGTTAGCGGTACCATTGGCGGGTTTACAGGCGAATGACCAG                          >  1:25943710/1‑67

                                                        CGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGCCCAGGCATTT                    >  1:21360043/1‑68

                                                        CGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT                    >  1:35052556/1‑68

                                                         GCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT                    >  1:10707366/1‑67

                                                         GCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT                    >  1:27567514/1‑67

                                                            TGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACC                 >  1:10752830/1‑67

                                                                 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA            >  1:29863664/1‑67

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:22437384/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:2299315/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          <  1:6427432/68‑1

                                                                  ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAG           >  1:23163790/1‑67

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:10028387/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:824912/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:37246522/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:914441/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:34434423/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:4106959/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:34507385/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:37825734/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:34736711/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:35600707/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:36975462/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:32858764/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:21474916/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:23276789/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:20192808/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:24976694/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:12688772/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:30892597/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC         <  1:11044368/68‑1

                                                                   CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC          >  1:7441353/1‑67

                                                                     GCCATTAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:18451168/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:28141214/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:30048822/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:4465046/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:13628827/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:35290784/68‑1

                                                                     GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       <  1:248255/68‑1

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCt       >  1:22206323/1‑66

                                                                      CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA       >  1:33004486/1‑67

                                                                       CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT      <  1:12372753/67‑1

                                                                        AATAGGGATAGCGGTACCATTGGCTGTTTTACAGGCGAATGACCATGCATTTACCGACCAGCCCATCA    <  1:32281819/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:20942430/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:10378884/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:7487289/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:6491642/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:26127162/68‑1

                                                                        AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    <  1:22164296/68‑1

                                                                         ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATTACCAGTCATTTACCGACCAGCCCATCA    >  1:5050219/1‑67

                                                                         ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA    >  1:12147355/1‑67

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:5228806/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:13034334/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:35023600/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:6817173/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:25287503/68‑1

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:30303905/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:2519147/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  >  1:36405857/1‑68

                                                                          TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  1:10175684/68‑1

GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4538634‑4538708

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC  <  CP009273/4538723‑4538657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.