| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 408 (0.860) | 1921 (4.150) | 35/110 | NT | 80.9% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 509 (1.100) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 2165 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:6270040/1‑68 cagTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:38780337/4‑68 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:11556645/3‑67 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAC > 1:19055690/2‑68 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAC > 1:17734966/2‑68 gTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGCGTCAAAC > 1:38026282/2‑68 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:33761804/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:17372585/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:37309412/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:34731643/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:1510173/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:555470/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:13387802/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:12704612/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:24725368/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:25801322/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:26547861/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTATCCTTGAGAATTATTTTTTCGCGGGAGAAACt > 1:29294680/1‑66 ATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:38399264/1‑66 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:21959778/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:34024803/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:30819253/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:21067964/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:35176926/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:2135334/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:183550/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:18045345/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:37624788/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:14493485/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:29944512/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:6575920/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:27429372/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAC > 1:23656808/1‑67 AAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:23445638/1‑67 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGATAATTATTTTTTCGCGGGTGAAACGACTCC < 1:35886731/68‑1 gccGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7025323/4‑65 GCTGTCAAACATGAGAATTCCATCGGCTGCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:8492410/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTTGCGGGTGAAACGACT > 1:11117004/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGCCT > 1:277975/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:32514399/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:3164671/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:31330007/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:34427980/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:27152455/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:39130703/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:4301226/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:7364936/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:29077372/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:28212656/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:9554890/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:26888369/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:12341306/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:1304514/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:13972900/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:16995516/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:18746808/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:19450189/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:20204515/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:24071699/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:10017770/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:25596956/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:25182511/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTATTTCGCGGGTGAAACGACT > 1:11877393/1‑65 TGTCAAACATGAGAATTCCATCCGCTTCTCGTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:21661121/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:8818076/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:22601501/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG > 1:7810061/1‑68 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:1607075/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:5945272/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:20536106/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:16601847/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:14196966/68‑1 TGTCAAACATGAGAAATCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:2882815/68‑1 GTCAAACTTGAGTATTCCATCGGCTTGTGCTTGAGAATTTTTTTTTCGCGGGTGAAACGACTCCTGG < 1:26164666/67‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:29580949/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT < 1:28526373/68‑1 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:4671946/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:1023182/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:36377474/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:37026830/1‑68 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:30518725/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:22281069/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:924264/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:33105254/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:5110817/1‑67 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:33346345/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:10609859/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:2078042/1‑68 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:14782401/1‑68 GAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTG < 1:35619838/45‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG > 1:32101113/1‑67 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:8149685/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:15759073/67‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:24480760/1‑68 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA < 1:19868319/68‑1 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:13687244/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:32750172/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:15475538/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:23036140/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:36741368/1‑68 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |