| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 408 (0.860) | 1921 (4.150) | 35/110 | NT | 80.9% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 509 (1.100) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 2857 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 | atcgtgaggatgcgtcatctccattaattcactgatcagTGATAATCTGTCAAACATGAGAATtcca < 1:4410114‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:13398562‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:31155731‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:29896009‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:25812939‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:21012782‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:18856965‑M1/28‑2 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:1453439/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:12299293/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:20758918/1‑68 (MQ=255) ccAGCGCCACCACCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt < 1:27184369/68‑1 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:7485706/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:9600847/68‑1 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:11558740/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:15737787/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:25152315/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:8272995/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:19559267/1‑67 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:38780337‑M1/4‑30 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:14018795‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:18467460‑M1/2‑28 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc > 1:23435494/1‑67 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga > 1:10245721‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:35092324‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:7067255‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:37960163‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:39024970‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:23062779‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:4897338‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:24725368‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:19896587‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:7909675‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:9288807‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:14207889‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaa < 1:30703794‑M1/65‑40 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggagaaacg > 1:28570904‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTACatcctcttctccttaagaattattttttcccgggtgcaacg > 1:21960004‑M1/1‑26 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:19123057‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:5672330‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:28308562‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:36153613‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:34349994‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:24448606‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:36947634‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggggaaacgact < 1:332473‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc > 1:21728930/1‑67 (MQ=255) gCTTTCAAACATGAGAATTCCataatcttctccttgagaattattttttagcgggtgaaacgact > 1:26897039‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:32636756‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:11130189‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:27479649‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:1185816‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:38454136‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:26136787‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:22689976‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:22321808‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:1304514‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:6631412‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:17387789‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:33658849‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:10017770‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:15102785‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatacgcttctccttgagaaatattttttcgcgggtgaaacgactcat > 1:33956808‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:5993273/1‑66 (MQ=255) tGTCAATCATGAGAATTCCatccgcttctccttgagaattattttttcgggggtgaaacgactcctgg < 1:8910193‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:36593672‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:35443940‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:3724200‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:37571093‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:4153930‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:14805214‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:20240023‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:20536106‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:1607075‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgctcctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:32254740‑M1/68‑50 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:17778615‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:24096965‑M1/1‑14 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:8556753‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:27887199‑M1/68‑55 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:29458801‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:12701199‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:29161576‑M1/1‑13 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:28915995‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:21308633‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:1368846‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:35823774‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:31921548‑M1/1‑11 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCAGGACGCCCGCCACCCTCCGGGCCGtt < 1:17083978/68‑1 (MQ=21) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag > 1:10714417‑M1/1‑7 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:23662715‑M1/67‑61 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:31535200/67‑1 (MQ=255) gaATACCGATCCCCAAATCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:5231599/67‑1 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca < 1:16619674‑M1/68‑64 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:15475538‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:32921594‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:18104263‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:6270870‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:25565983‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:26510381‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:30260047‑M1/1‑3 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc > 1:34673463/1‑68 (MQ=255) | GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |