New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 725624	246 (0.520)	12 (0.030)	8/98	NT	5.3%	coding (586/4194 nt)	rhsC	Rhs family putative polymorphic toxin
	?	CP009273	= 725679	NA (NA)					coding (641/4194 nt)	rhsC	Rhs family putative polymorphic toxin

TCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/725551‑725624 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcggTCCACCAGCCCGGTCAGTACCCGGT  <  CP009273/725679‑725655                                                                                                     TCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGG                                 >  1:6295414/1‑68  CGTTATCTGGCGACAAACAGTCCGCAGGGGGCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGA                                <  1:4749947/68‑1  CGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGA                                <  1:24771395/68‑1   GTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAA                               <  1:20705237/68‑1     tagCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGC                             <  1:4133175/65‑1     TATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGC                             <  1:12047496/68‑1     TATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGC                             <  1:14273249/68‑1     TATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAG                              <  1:14918111/67‑1     TATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAG                              <  1:31696707/67‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:38603070/68‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            >  1:34865932/1‑68      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            >  1:34394218/1‑68      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:36166571/68‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            >  1:3093420/1‑68      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:7840685/68‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:8457100/68‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:1171221/68‑1      ATCTGGCGACAAACAGTCCGCAGGGGCCGTGGGGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCG                            <  1:21990002/68‑1       TCTGGCGCCAAACAGTCCGCAGGGGCCGTGGTGGCTGCGCGGCTGGTGTGAGCGGGTGCCGGAAGCGG                           <  1:36966386/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGCAGCGG                           <  1:38079074/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGCAGCGG                           <  1:20758486/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGG                           <  1:24405578/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGG                           <  1:37011077/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGG                           <  1:36966362/68‑1       TCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGGGCCGGAAGCGG                           <  1:33532128/68‑1        CTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCtga                          <  1:30444425/68‑4         TGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCC‑GAAGCGGTCC                        <  1:19410158/68‑1               CAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAG                   <  1:19836812/68‑1               CAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAG                   <  1:16003212/68‑1                AAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCCGAAGCGGTCCACCAGC                  <  1:22781180/68‑1                       CCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAGCCCGGT             <  1:6636325/66‑1                       CCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGGGCCCGAAGCGGTCCACCAGCCCGG              <  1:9346464/65‑1                         GCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAGCCCGGTCAGT         <  1:31347638/68‑1                         GCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAGCCCGGTCAGT         <  1:24209010/68‑1                              GGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAGCCCGGTCAGTAC       <  1:11072974/65‑1                               GCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCG    <  1:246194/67‑1                               GCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCG    <  1:198482/67‑1                               GCCGTGGTGGCTGCTCGGCGGGTGTGAGCGGGTGCCGGAAGCGGTCCACCAGCCCGGTCAGTACCCG    <  1:11907904/67‑1                                 CGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCCGAAGCGGTCCACCAGCCCGGTCAGTACCCGGT  <  1:25926146/67‑1                                                                                                     TCGTTATCTGGCGACAAACAGTCCGCAGGGGCCGTGGTGGCTGCTCGGCTGGTGTGAGCGGGTGCCGGAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/725551‑725624 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcggTCCACCAGCCCGGTCAGTACCCGGT  <  CP009273/725679‑725655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.