BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1505831 =	370 (0.780)	22 (0.060)	8/94	NT	6.9%	intergenic (+165/‑80)	ydcR/ydcS	putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog
*	?	CP009273	1505880 =	279 (0.700)	22 (0.060)	8/94	NT	6.9%	intergenic (+214/‑31)	ydcR/ydcS	putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog

Only 100 of 174 total aligned reads displayed.

CTTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1505905‑1505831

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  >  CP009273/1505880‑1505946

CTTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGAC                                                                            <  1:18304322/68‑1

CTTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGA                                                                             <  1:22122327/67‑1

CTTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGA                                                                             <  1:25123411/67‑1

 TTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACG                                                                           <  1:15465156/68‑1

   ACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGC                                                                         >  1:37846882/1‑68

   ACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGC                                                                         >  1:21193528/1‑68

    CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:37486547/1‑68

    CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:719798/1‑68

    CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16521755/1‑68

    CTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:35687722/1‑68

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGG                                                                       <  1:33423758/68‑1

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:29483525/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:23720470/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:21598642/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:2229602/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:22528920/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:36956364/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:2584342/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:36685998/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:5217056/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:27125439/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:28114092/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:28307984/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:28403473/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:29829419/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:4712902/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:35980346/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:313247/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:32220750/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:32683365/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:33167341/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:33288798/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:33299420/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:3368229/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:34850959/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:18871354/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:17892341/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16906255/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:16482866/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:8303943/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:12197671/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:12571628/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:15182815/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:14715830/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:10638796/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:14296062/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:10325719/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:20295822/1‑67

     TCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCG                                                                        >  1:13153019/1‑67

      CCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGC                                                                      <  1:38514282/68‑1

      CCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGC                                                                      <  1:17774021/68‑1

       CTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT                                                                     <  1:2130217/68‑1

       CTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT                                                                     <  1:4737288/68‑1

       CTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT                                                                     >  1:12511767/1‑68

         GTCGTAATTTATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGA                                                                   <  1:23879106/68‑1

         GTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGA                                                                   <  1:35545761/68‑1

                      GTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACG                                                      <  1:1270548/68‑1

                             CGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGA                                                <  1:31655870/67‑1

                             CGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGA                                                <  1:8830159/67‑1

                             CGCCGTGCCGTAAAAATATCTCCTTGTTAAACCATAGACGGCGGCTGAACAATTAATTACGACAGGA                                                <  1:23975798/67‑1

                             CGCCGTGCCGTAAAAATATCGCCTTGTATACCCATAGACGCCGTCTGAACAATTAATTACGACAGGA                                                <  1:33822755/67‑1

                                   GCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGA                                          <  1:27596670/67‑1

                                   GCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGA                                          <  1:4236620/67‑1

                                     CGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACC                                        <  1:1797236/67‑1

                                     CGTAAAAATATCTCCTTGTTTAACCAAAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACC                                        <  1:19513259/67‑1

                                          AAATATCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGA                                  <  1:21003861/68‑1

                                               TCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAG                             <  1:30059348/68‑1

                                               TCTCCTTGTTTAACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAG                             <  1:25572933/68‑1

                                                 taCTTGTTTCACCATAGACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAC                           <  1:7890077/66‑1

                                                                  ACGGCGGCTGAACATTTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:34314461/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:14302299/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:15432179/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:16551930/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:26615479/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:26314558/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:18517090/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:10972335/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:19409294/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:37124814/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:6150109/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGC           <  1:9232726/67‑1

                                                                  ACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAG            >  1:9410109/1‑66

                                                                  ACGGCGGCTGAACAATTAATCACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCC          <  1:7455379/68‑1

                                                                    GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:30055590/68‑1

                                                                    GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:19528504/68‑1

                                                                    GGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTG        <  1:6386284/68‑1

                                                                     GCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGT       >  1:10186853/1‑68

                                                                     GCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGT       >  1:18314938/1‑68

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGT     >  1:31093248/1‑68

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:10008852/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:10650626/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:8815089/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:15763713/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:18248862/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:5896652/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:562509/67‑1

                                                                       GGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTG      <  1:25981462/67‑1

                                                                         CTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTG    <  1:8310288/67‑1

                                                                          TGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  <  1:35452007/68‑1

                                                                          TGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGC   <  1:36441939/67‑1

CTTACTCCTGTCGTAATTAATTGTTCAGCCGCCGTGCCGTAAAAATATCTCCTTGTTTAACCATAGACGGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1505905‑1505831

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG  >  CP009273/1505880‑1505946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.