| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 370 (0.780) | 22 (0.060) | 8/94 | NT | 6.9% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 279 (0.700) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 504 total aligned reads displayed.
GCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505814‑1505947 | gtcgtaattaattgttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGa < 1:35545761‑M2/2‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:23249398/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:32070782/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:16443035/67‑1 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:4885918/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:21788606/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:20086398/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:22841979/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:12222452/66‑1 (MQ=255) ggtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:874967/65‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:36827394/68‑1 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAAaattaatt > 1:15157533/1‑68 (MQ=255) ccTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:11632030/1‑67 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg > 1:26330357/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:17713152/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:32423048/68‑1 (MQ=255) GCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAgg < 1:26558625‑M1/68‑1 (MQ=255) cgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGa < 1:32937961‑M2/21‑1 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:25673457‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:33167341‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:27125439‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:10325719‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:33299420‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:3368229‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:34850959‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:37104966‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:4712902‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:8891838‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:13153019‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:15831907‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:28244497‑M1/1‑68 (MQ=255) TCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAg < 1:25123411‑M1/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:31368237/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:11070769/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:6895226/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:35895828/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:16788342/67‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:37971320/68‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:5383321/68‑1 (MQ=255) cgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGAcc < 1:1797236‑M2/29‑1 (MQ=255) aTGGTTAAACAAGGATATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:19919203/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:21286132/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:23023439/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:18382914/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTCTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt > 1:5746553/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:39014321/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:30528344/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:1404465/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:16029979/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:14624982/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:4247340/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:21434695/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:19625676/1‑68 (MQ=255) gTTAAACAACGAGATATTTTTACGGCACGGCGGCTGAACAATAAATAACGACAGGAGTAAGACCTTAt > 1:7884509/1‑68 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:17097666/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:29617869/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:19467496/68‑1 (MQ=255) aaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:21003861‑M2/35‑1 (MQ=255) aaaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAg < 1:37417748/68‑1 (MQ=255) aaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGc > 1:8018043/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:2460317/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:6480987/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:3075193/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:9480099/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:13631734/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:34618033/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:27878300/1‑68 (MQ=255) tctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAg < 1:30059348‑M2/40‑1 (MQ=255) gagaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACa > 1:1859435/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:19247562/51‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:29181655/66‑1 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTg > 1:20532786/1‑67 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc < 1:22343784/68‑1 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc < 1:18269833/68‑1 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACAATTCCCCgc > 1:26002709/1‑68 (MQ=255) tACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:7658120/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:22171685/1‑68 (MQ=255) gcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:33886710/1‑67 (MQ=255) gcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:31254861/1‑67 (MQ=255) gcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca > 1:14439724/1‑67 (MQ=255) cacggcGGCTTAAAAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:16527904/68‑1 (MQ=255) acggcggctGAACATTTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:34314461‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:15432179‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:9232726‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:7243730‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:6150109‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:31647716‑M2/58‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:12634490‑M2/61‑1 (MQ=255) gtcTGAACAATTAATTACGAGAGGAGTAAGACCTTATTAGCAAGACATTTGCCCGCATCAGCCtgtg < 1:562478/65‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgt > 1:18865199‑M2/5‑68 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:23787502‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:1563123‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:10650626‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:10008852‑M2/63‑1 (MQ=255) ctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgtg < 1:8310288‑M2/65‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgcg < 1:35452007‑M2/67‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgc < 1:24192306‑M2/66‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgc < 1:36441939‑M2/66‑1 (MQ=255) gAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgcgc < 1:9118843/68‑1 (MQ=255) gAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgcgc < 1:38460670/68‑1 (MQ=255) | GCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505814‑1505947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |