| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2680401 | NA (NA) | 17 (0.040) | 4/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 173 total aligned reads displayed.
TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCTTAAGGTGCTGTAATTTGATG > 1:2276812/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:37996849/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:2405507/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:24507173/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:31911224/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:16637958/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:36771231/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:38506829/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11631964/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11279399/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:20177883/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11082782/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:4912003/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:7477018/1‑68TCTGGGCGTGAAGCAGGAAAACATTCAATACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:28644474/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:20054969/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:22413145/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:960102/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:30023091/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:33644001/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:4288915/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:4637328/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTATGGCCCGCATAAGGTGATGTAATTTGATGTT > 1:29332215/1‑68 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:6392671/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:5943732/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:27971501/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:25950547/1‑67 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:18038511/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:4336622/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:36249524/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:18038496/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:726966/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:14383360/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:18426675/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGC < 1:16612415/67‑1 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGC < 1:10462855/67‑1 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGC < 1:10758798/67‑1 CGTGAAGCGGGAAAACATTCATTACGAATGCTTTGGCCCGCGTAAGGTGCTGTAATTTGATGTTGCCG > 1:28338800/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:21609538/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:13200649/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:852218/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:893290/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:12629822/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:17734291/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:13103905/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:38414092/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCACATAAGGTGCTGTAATTTGATGTTGCCG > 1:4824468/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCAGCATAAGGTGCTGGAATTTGATGTTGCCG > 1:26842589/1‑68 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:13724920/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:37260944/68‑1 GAATCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:33870968/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:9321885/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:12172307/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:2834147/67‑1 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:28836133/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:1793764/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:3921784/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:35083583/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:7062118/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:36110923/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:8856630/67‑1 AGGTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCCCCTTATGCGG > 1:12529419/1‑67 GGTGCTGTAATTTGATGTTGCCGGATGTTTCCTTCCGGCAACATCATATTACAGCACGTTATGCGGG > 1:6279937/1‑67 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACCGCACCTTATGCGGGCC > 1:19047415/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTTTGCGGGCC > 1:8011748/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:3205578/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:31400202/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:4141450/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:14304463/1‑68 TGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCA > 1:37513537/1‑68 TGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCA > 1:18506920/1‑68 TGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT > 1:34931424/1‑68 TGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT > 1:24745268/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACCGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:37455187/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:33397072/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:31682904/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:26860896/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT < 1:24508081/67‑1 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAA < 1:29044703/66‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCTAAGCATTCGTAATGAA < 1:3832974/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAA < 1:10174695/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAA < 1:27639019/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGA < 1:18813687/67‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:6485461/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:33266240/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:15778864/68‑1 CGGATGTTTCCCTCCGGCAACATCAAATTACAGCACCTTATGCTGGCCAAAGCATTCGTAATTAATGT < 1:36166102/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:30804532/1‑68 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:18597664/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCGTATGCGGGCCAAAGCATTCGTAATGAATGTT > 1:32941895/1‑68 GGATGTTTCCATCCGGCAACAGCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:30478147/68‑1 GATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTT > 1:11231230/1‑68 GATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTT > 1:3540293/1‑68 TGTTTCCATCCGGCAACATCTAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:13680697/67‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:23295056/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:20723866/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:20109175/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:10137840/67‑1 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:22871693/1‑66 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:21674254/1‑66 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |