BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3375198 =	456 (0.970)	37 (0.090)	11/94	NT	9.5%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
*	?	CP009273	3375228 =	324 (0.820)	37 (0.090)	11/94	NT	9.5%	coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

Only 100 of 210 total aligned reads displayed.

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:24941255/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:16117392/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:27329512/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:2864990/1‑68

   taGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:37239398/66‑1

   TTGCCGCCTTCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:10632794/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGC                                                                         <  1:11968763/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:33387987/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:22975177/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:33314520/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:33127198/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:32637241/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:31145335/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:29468188/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:2845830/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:27235016/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:24588194/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:23896680/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:9884270/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:34521875/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:35129310/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:35424375/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:35931853/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:3626297/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:36996817/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:38258979/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:4275972/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:492841/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:5467158/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:5605921/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:6336855/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:7644972/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:8177845/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:21756386/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:16436399/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:21713348/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:16887991/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:11075955/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:10856650/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:20755575/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:19680457/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGGGATCATTTCAGC                                                                         <  1:21177810/68‑1

   TTGCCGCCATCTTTTAGCTGACAATCGCTCAACGTTGCACGTTCCAGCGCTGGCGTGAGCATTTCAGC                                                                         <  1:27692682/68‑1

   TTGCCGCCATCTTTTAGCGGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:33582141/68‑1

   TTGCCGCCATATTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:17381353/68‑1

   TTGCCGCCAGCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:1142470/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:2059694/68‑1

      CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         >  1:30332759/1‑65

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:3201177/1‑68

        GCCATCTTTTAGCTGCCCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:17114231/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:7584469/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:37803236/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:14853841/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:16671664/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:6837075/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:6111484/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:30511405/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:7816041/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:32335331/68‑1

         CCATCTTTTAGCTGCCCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    >  1:34179412/1‑67

          CATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                  <  1:36009065/68‑1

          CATCTTTTAGCGGACCATCGCTCAACGATGCACCTTCCAGCGCGGGCGTGATCATTTCAGCGCTGGAA                                                                  <  1:31304235/68‑1

           acCTTTTAGGTGACCATCGCTCAACGTCGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAG                                                                 <  1:2279295/66‑1

             CTTTTCGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:26823303/68‑1

             CTTTTAGCTGCCCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:4690264/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:19061296/68‑1

             CTTTTAGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:11758367/68‑1

              TTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCGGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:38383250/67‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:10748468/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:38911187/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:25358546/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:18753389/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:3472047/68‑1

                  AGCTGACCAGCGCGCAACGGTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:14047730/68‑1

                    CTGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:21106535/68‑1

                     tcACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCCGCGCTGGAAGGTGCAACGT                                                        <  1:12366940/65‑1

                     tcACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCCGCGCTGGAAGGTGCAACGT                                                        <  1:17615810/65‑1

                     cGACCATCGCCCAACGTTGCACCTTCCAGCGCTGGGGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:26516313/66‑1

                            ccCTCAACGTTGCACCTACCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGAT                                                <  1:11254475/66‑1

                                  ACGTTGCACCTTCCAGCCCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                          <  1:27735327/68‑1

                                  ACGTGGCCCCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                          <  1:5665930/68‑1

                                   ccTTGCACCTTCCACCGCGGGCGTGACCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:7252525/66‑1

                                   CGTTGCCCCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:28320888/68‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:14433246/68‑1

                                   CGTGGCACCTTCCAGCGCTGGCGGCATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:21852410/68‑1

                                              CCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC                              >  1:20939219/1‑68

                                                     gGGCGTGATCATTCCCCCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAG                       <  1:8588865/67‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:13401502/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:38060242/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:37458862/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:16797210/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:32739866/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:28685098/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:26574508/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:2230463/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA       <  1:20387407/66‑1

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGTCGGCAAAGGTATTAAAATCGATGAAGT    <  1:29869291/67‑1

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTT   >  1:15265644/1‑68

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTT   <  1:10540055/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  <  1:36745444/68‑1

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.