| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3375198 = | 456 (0.970) | 37 (0.090) | 11/94 | NT | 9.5% | coding (1097/1368 nt) | degQ | serine endoprotease, periplasmic |
| ? | CP009273 | 3375228 = | 324 (0.820) | coding (1127/1368 nt) | degQ | serine endoprotease, periplasmic | |||||
Only 100 of 618 total aligned reads displayed.
GCCTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC > CP009273/3375132‑3375265 | caacttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttcc < 1:32266570‑M1/2‑1 (MQ=255) ccTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCa > 1:23290842/1‑68 (MQ=255) aacttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCa > 1:15265644‑M1/66‑68 (MQ=255) ctgctgCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCa > 1:4860405/1‑67 (MQ=255) acttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgtagcaccttCCa < 1:3367928‑M1/3‑1 (MQ=255) tgctgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc < 1:7496365/68‑1 (MQ=255) cttcatcgattttaatacctttgccgccatcttttagctgaccatcgctcaacgttgcaccttCCAgc > 1:38060242‑M1/64‑68 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgcgc < 1:4396830/67‑1 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAgc > 1:33485214/1‑65 (MQ=255) tgcGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCt < 1:34794691/68‑1 (MQ=255) gTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGa < 1:10419431/67‑1 (MQ=255) aaCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAAt > 1:10354695/1‑68 (MQ=255) aaCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAAt > 1:3696364/1‑68 (MQ=255) aCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATg > 1:33079024/1‑68 (MQ=255) aCGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATg > 1:23919865/1‑68 (MQ=255) ggCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGa > 1:14608824/1‑67 (MQ=255) ggCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGa > 1:13466165/1‑67 (MQ=255) ggCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGa > 1:16983239/1‑67 (MQ=255) aaCCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACg < 1:22699463/68‑1 (MQ=255) aaCCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACg < 1:27691592/68‑1 (MQ=255) aaCCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACg < 1:24323136/68‑1 (MQ=255) cACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCa > 1:24980884/1‑68 (MQ=255) cTGGAAGTAGTAGTGACGCTCGATAGCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:28821982/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:29841177/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:4126277/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:38458673/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:31538241/68‑1 (MQ=255) cTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgc < 1:14071012/68‑1 (MQ=255) cTGGAAGTAGAAGGGACGCTCGAAACCAGCACCTCTTCGTCGGCCAGCGCGGAAATGATCACGCCAgc < 1:2233654/68‑1 (MQ=255) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGGCGTGATCATTTCAgcgc < 1:11850327/68‑1 (MQ=21) ggAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAgcgc < 1:781021/68‑1 (MQ=255) aaGTAGAAGTGACGCTCGATACCCGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTg > 1:25425558/1‑68 (MQ=255) aaGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTg > 1:19274948/1‑68 (MQ=255) gccatcttttagctgaccatcgctcaacgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCTgg > 1:20939219‑M1/39‑68 (MQ=255) aGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTgg < 1:25699971/68‑1 (MQ=255) gTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGa > 1:37773216/1‑68 (MQ=255) tAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCCCGCCAGCGCTGGaa > 1:30360211/1‑68 (MQ=255) aGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGGAATGATCACGCCAGCGCTGGAAg < 1:20249135/68‑1 (MQ=255) aGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAg < 1:12919911/68‑1 (MQ=255) gAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAgg > 1:22436242/1‑68 (MQ=255) aaGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:26522670/1‑68 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:7958251/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:19895492/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:37405020/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:6383294/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:28079114/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:36415617/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:38733646/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:21099002/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:35086175/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt > 1:34566042/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:18601886/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGt < 1:18940342/67‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTg < 1:17261099/68‑1 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCCCTGGAAGGt > 1:2304970/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATAACGCCAGCGCTGGAAGGt > 1:17535190/1‑67 (MQ=255) aGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCGGAAATGATCACGCCAGCGCTGGAAGGt < 1:12564923/67‑1 (MQ=255) gTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGc > 1:35634009/1‑68 (MQ=255) ttagctgaccatcgctcaacgttgccccgtCCGGGGCTGAAATGATCCCGCCAGCGCTGGCAGGtgg < 1:20444962‑M1/37‑2 (MQ=255) tGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCa > 1:21653543/1‑68 (MQ=255) gACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGc < 1:38240769/66‑1 (MQ=255) gACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCa > 1:8416845/1‑67 (MQ=255) gctgaccatcgctcaacgttgcaccttCCAGCGCGGATATGCTCACGCCAGCGCGGGAAGGTGCAACg < 1:36160348‑M1/41‑1 (MQ=255) gctgaccatcgctcaacgttgcaccttCCAGCGCGGAAATGATCACGCCAGCGCTGGAAGGTGCAACg < 1:14433246‑M1/41‑1 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAAc < 1:16144235/67‑1 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACg > 1:31857203/1‑68 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACg > 1:16425958/1‑68 (MQ=255) cGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACg > 1:17997458/1‑68 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAGTGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:3069606/68‑1 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:1570896/68‑1 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:6010775/68‑1 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:26265897/68‑1 (MQ=255) gCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGt < 1:22220829/68‑1 (MQ=255) ctgaccatcgctcaacgttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGGGCCACGt < 1:5665930‑M1/42‑1 (MQ=255) ctgaccatcgctcaacgttgcaccttCCAGCGCGGAAATGATCACGCCAGCGGTGGAAGGGGCCACGt < 1:9111113‑M1/42‑1 (MQ=255) tCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTg > 1:5166558/1‑68 (MQ=255) tACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGc < 1:29195423/67‑1 (MQ=255) ccAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGAt > 1:30897846/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:10033594/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:11513570/1‑68 (MQ=255) cACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTc > 1:21228091/1‑68 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATgg < 1:27883305/65‑1 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATgg < 1:19582618/65‑1 (MQ=255) aCCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCa > 1:12007160/1‑68 (MQ=255) ccTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAg < 1:20666778/68‑1 (MQ=255) ccTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAg < 1:11115747/68‑1 (MQ=255) ccTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAg < 1:6803942/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:13306496/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:3206843/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:32524227/68‑1 (MQ=255) ctctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGc < 1:8759732/68‑1 (MQ=255) tctTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCt > 1:24549800/1‑68 (MQ=255) gttgcaccttCCAGCGCTGAAATGATCACGCCAGCGCGGGAAGGTGCAACGTTGAGCGATGGTCAgcg < 1:29522725‑M1/58‑2 (MQ=255) gtcgGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg < 1:7229612/68‑1 (MQ=255) accttCCCGCGCTGAAATGATCACGCCAGCGCTGGAAGGGGCAACGTTGAGCGATGGTCAGCTAAAAg < 1:28383488‑M1/63‑1 (MQ=255) accttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAg < 1:10737232‑M1/63‑1 (MQ=255) cgGCCCGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGCGCGATGGTCAGCTAAAAGAt > 1:2696747/1‑68 (MQ=255) ttCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATg < 1:36009065‑M1/66‑1 (MQ=255) CCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATggc < 1:16671664‑M1/68‑1 (MQ=255) CCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGGCAGCTAAAAGATgg > 1:34179412‑M1/1‑67 (MQ=255) | GCCTGCTGCGTAACGGCAAACCACTGGAAGTAGAAGTGACGCTCGATACCAGCACCTCTTCGTCGGCCAGCGCTGAAATGATCACGCCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGC > CP009273/3375132‑3375265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |