| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701775 = | 63 (0.130) | 7 (0.020) | 4/88 | NT | 7.5% | intergenic (‑710/+201) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701970 = | 122 (0.330) | intergenic (‑905/+6) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 650 total aligned reads displayed.
TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGG > CP009273/3701708‑3701842 | tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:5150105‑M1/1‑68 (MQ=255)tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:3152607‑M1/1‑68 (MQ=255)tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:13837617‑M1/1‑68 (MQ=255)ctggtagcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcga < 1:36115981‑M1/1‑1 (MQ=255)ctggtagcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcga < 1:15265736‑M1/1‑1 (MQ=255) cAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:931698‑M1/1‑68 (MQ=255) gtagcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaa < 1:28259020‑M1/4‑1 (MQ=255) ggCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:14431275‑M1/1‑68 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:20203631‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:33612248‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:26319043‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:34164691‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:8964857‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:17832555‑M1/1‑67 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctttcaccgaccaaattcgATAAg > 1:28784562‑M1/63‑67 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:23998811‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:23121812‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:35757845‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:36522933‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:38852520‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:11330761‑M1/5‑1 (MQ=255) agcgcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAg < 1:2046574‑M1/5‑1 (MQ=255) cTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCC < 1:9598933‑M1/68‑1 (MQ=255) gcacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCt < 1:15782609‑M1/8‑1 (MQ=255) cacttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCt < 1:20847903‑M1/8‑1 (MQ=255) gtcgagtcgaCCCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGa > 1:29895285‑M1/1‑66 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:33331295‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:19912077‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:324500‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10023263‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27718714‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10717290‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:38370356‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7204634‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:16683498‑M1/1‑67 (MQ=255) acttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCTGc > 1:18850575‑M1/58‑67 (MQ=255) acttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCTGc > 1:26925608‑M1/58‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:21088182‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:11662697‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:16121832‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:33476145‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:7030059‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:23593019‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:34773804‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:5370997‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:172272‑M1/67‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCAACCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:14601127‑M1/68‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:29031152‑M1/67‑1 (MQ=255) tcgggacgaaggggtcggaggttcgaatcctctatctccgaccaaattcgAAAAGCCTGCTCGTTGa > 1:26116478‑M1/51‑67 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:10251015‑M2/1‑68 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCATAAAAGGCTGCTCGTTGAGCAGTCTTTTCTAATTTGGt < 1:861049‑M2/68‑1 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:36780727‑M2/1‑67 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGCGCAGGCTTTTCGATTTTGGTc > 1:24723512‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGt < 1:5651970‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGt < 1:768868‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGt < 1:13117987‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:27331528‑M2/1‑68 (MQ=255) GTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCg > 1:14956673‑M2/1‑68 (MQ=255) TTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCg < 1:2542841‑M2/67‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAACGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:23224065‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:6439188‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37990431‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:19174590‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37341486‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:18384297‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:22162465‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:22378794‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:436930‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:4486943‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:18162215‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:6712373‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:16564632‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:31991189‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:27905757‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:12726268‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:30852436‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:29482632‑M2/68‑1 (MQ=255) TCTCATCCACATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:12087726‑M2/68‑1 (MQ=255) tcctctatcaccgcccaaattcgAAAAGCCTGCGCGTTGCGCCGGGTTTTCGAATTTGGTCGGTGATa < 1:29233688‑M1/45‑1 (MQ=255) aTGAGCTGCAGATGCAAAAAAGCCTGCTCcacgagccgggttttgtgcatctgcagctcaggaggtgg > 1:24127647‑M1/1‑29 (MQ=255) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:37601801/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:39046234/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:35452219/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:12398254/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:31058361/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:16265055/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:8776267/67‑1 (MQ=33) tGCAGATGCAAAAAAGCCTGCTCaacgcgcaggcttttttgcatctgcagctcatgaggatgagaa > 1:25020304‑M1/1‑23 (MQ=255) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCg < 1:15539161/68‑1 (MQ=39) aGATGCAAAAAAGCCTGCTCaacgagcaggcgtttttgcatctgcagctcatgaggatgagaacctcc > 1:30320991‑M1/1‑20 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTAGGTGATAGAGGATTACTCGcc < 1:3436705/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTGGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:2447564/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCAc < 1:17402999/66‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:9702549/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:26654536/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTACTCGCCACt < 1:8336538/67‑1 (MQ=255) gCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTc < 1:16926712/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg > 1:6141519‑M1/1‑68 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg > 1:22747947‑M1/1‑68 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg > 1:21455725‑M1/1‑68 (MQ=255) | TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGG > CP009273/3701708‑3701842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |