| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701775 = | 63 (0.130) | 7 (0.020) | 4/88 | NT | 7.5% | intergenic (‑710/+201) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701970 = | 122 (0.330) | intergenic (‑905/+6) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 255 total aligned reads displayed.
GAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGG > CP009273/3701928‑3702037 | gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:7642787/1‑68 (MQ=31)gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:13352374/1‑68 (MQ=31)gAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTc > 1:6136838/1‑68 (MQ=31) accgaccaaattcgaaaagcctgctcaacgaggaggcttttCGAAGTTGGTCGGTGATAGAGgattgg > 1:29428708‑M2/42‑66 (MQ=255) aGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCg > 1:12295451/1‑68 (MQ=33) aGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCg > 1:20246351/1‑68 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGCGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:28335989/1‑68 (MQ=25) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:37529992/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:17842608/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:17993987/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:7138460/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:19554328/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:4753400/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:38635325/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:14338689/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:27740879/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:36205406/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:34782992/1‑68 (MQ=35) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGa > 1:10055657/1‑68 (MQ=35) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:21131265/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:32784559/68‑1 (MQ=40) gCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAAcc < 1:12117825/68‑1 (MQ=40) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt < 1:17169727/67‑1 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt > 1:3983645/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCt > 1:5592395/1‑67 (MQ=255) ctGCAAAAAAGCCTGCTCGTTGAGCAGGCGTTTCGATTTTGGTCGGTGATAGAGGATTCGAACCTcc > 1:35437954/2‑67 (MQ=14) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCg < 1:15099275/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGa < 1:20830758/68‑1 (MQ=255) aaaacGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:12558998/68‑1 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGAcccc < 1:8191474/68‑1 (MQ=255) aaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:2685043/1‑68 (MQ=255) aaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCt > 1:28108365/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATTGAGGATTCGAACCTCCGACCCCTTCg > 1:4014820/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATATAGGATTCGAACCTCCGACCCCTTCg > 1:14489910/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGCCCCCTTCg > 1:34840892/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:14187774/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:11270755/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:8417828/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:31980621/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCg > 1:23805636/1‑67 (MQ=255) ccTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:3446353/1‑67 (MQ=255) ccTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:12901750/1‑67 (MQ=255) ccTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt > 1:23256372/1‑67 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:14849112/66‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:33514099/66‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGt < 1:8703522/66‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTcc < 1:2442588/68‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTcc < 1:29752555/68‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTcc < 1:22422951/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCcg < 1:917891/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCcg < 1:8831473/68‑1 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCcgaacgaa < 1:5404407/68‑1 (MQ=255) cgagcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCcgaacgaa > 1:26269478‑M2/14‑68 (MQ=255) gagcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAg > 1:36638655‑M2/13‑68 (MQ=255) gagcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAg > 1:20556110‑M2/13‑68 (MQ=255) gcaggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGt > 1:34101510‑M2/11‑67 (MQ=255) caggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:33342100‑M2/10‑68 (MQ=255) atgcttttCGAATTTGGTCGTTGATAGAGGATTAGAACCTCCTACACCTTCGTCCCGAACGAAGTg < 1:18959025‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc < 1:15782609‑M2/59‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc < 1:18347188‑M2/59‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:29032881‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:11368788‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:16952162‑M2/58‑1 (MQ=255) aggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTg < 1:15479760‑M2/58‑1 (MQ=255) ggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:2996129‑M2/8‑66 (MQ=255) ggcttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTgc > 1:23137460‑M2/8‑66 (MQ=255) gttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:25652746‑M2/62‑1 (MQ=255) cttttCTAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:17368550‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCTGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:16403949‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATTGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:10225502‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGCGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:25997990‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:24610099‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:9654133‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:10948452‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:15320929‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:16077976‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:8607079‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:1684546‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:18792265‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:19359660‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:7034153‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:21435106‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:22168789‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:23998811‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:33942845‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:26965898‑M2/6‑67 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:27165742‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:36522933‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:27829344‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:35724692‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:35535418‑M2/62‑1 (MQ=255) cttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:33147903‑M2/6‑67 (MQ=255) cttttCGAACTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt < 1:22663829‑M2/62‑1 (MQ=255) cttatCGAATTTGGTCGGTGAAAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt > 1:28784562‑M2/6‑67 (MQ=255) ttttCGAATTTGGTCTGTTATAGATGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc < 1:35811876‑M2/64‑1 (MQ=255) ttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc < 1:37278488‑M2/64‑1 (MQ=255) ttttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc < 1:18416186‑M2/64‑1 (MQ=255) cGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAgg < 1:25098807/68‑1 (MQ=255) cGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAgg < 1:32249334/68‑1 (MQ=255) cGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAg > 1:38098134/1‑67 (MQ=255) | GAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGG > CP009273/3701928‑3702037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |